Gene detail information of Glyur000048s00002255.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G22510.10alkaline/neutral invertase
NRXP_003630134.10Alkaline/neutral invertase [Medicago truncatula]
COGYP_007129106.10neutral invertase [Gloeocapsa sp. PCC 7428]
Swissprottr|Q6H6N5|NIN3_ORYSJ0Neutral/alkaline invertase 3, chloroplastic {ECO:0000305} (Precursor)
trEMBLtr|G7LBD0|G7LBD0_MEDTR0Alkaline/neutral invertase {ECO:0000313|EMBL:AET04610.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048350843356074-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH100


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0033926  glycopeptide alpha-N-acetylgalactosaminidase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002255.1PF12899.2Glyco_hydro_1001646061.60E-215


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.548
SRR1783600control9.435
SRR1783602moderate drought stress12.134
SRR1811619moderate drought stress12.092

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.281
DRR006520Root Summer glycyrrhizin high producing strain19.232
DRR006521Root Winter glycyrrhizin high producing strain15.076
DRR006522Root Winter glycyrrhizin high producing strain14.903
DRR006523Root Summer glycyrrhizin low producing strain18.522
DRR006524Root Summer glycyrrhizin low producing strain18.504
DRR006525Leaf Summer glycyrrhizin high producing strain26.849
DRR006526Leaf Summer glycyrrhizin high producing strain26.427

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.165
SRR2868004Drought Stress(Tissue:root)23.702
SRR2967015Control (Tissue:root)23.415

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave28.042
SRR9715740Leave39.530
SRR9715741Leave33.335
SRR9715739Root6.448
SRR9715742Root14.113
SRR9715743Root13.398

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h20.261
SRR8749028MeJA induced 9h14.612
SRR8749029MeJA induced 9h12.968
SRR8749030Uninduced18.217
SRR8749031Uninduced16.560
SRR8749032Uninduced13.075

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root26.976
SRR8400027Control-Root25.689

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved