Gene detail

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Gene detail information of Glyur000048s00002264.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G53050.1	1.00E-112	Protein kinase superfamily protein
NR	AET04621.2	0	cyclin-dependent kinase [Medicago truncatula]
COG	YP_003371239.1	1.00E-23	serine/threonine protein kinase [Pirellula staleyi DSM 6068]
Swissprot	tr\|Q9ZVM9\|Y1461_ARATH	2.00E-136	Probable serine/threonine-protein kinase At1g54610
trEMBL	tr\|G7LC62\|G7LC62_MEDTR	0	Cyclin-dependent kinase {ECO:0000313\|EMBL:AET04621.2}

Sequence

Transcript Sequence

>Glyur000048s00002264.1
ATGGGATGCGTTAGCAGCAAGTACACTCCTCCTCCTCCTCCTCCTCGTAACCGTAACCGTAACCGTTACAGAAACAGAAACAGAAACCACCGGGAGGAGGAGTATGCAAACAGTGGTTCAGCACCCAAACCAATCAGCCGGAAGAAGCAGGTGGAAGTAGTGGTGAGTGGGAATGATAAGGCAGCTACTTCAGGTGTTGGAGGAGGAGAAGGAGATAAATTATTAGGTGTTGCTAATGCTAGAAATGATGATAATGATAAGAGTGAGGTGGTTAATGGGAATAATGTTATTATTAGTAGGCCTGAATCTGATCAGGAGAAGAAGAAGAGTGGAAGCCATGAAGAACAGTACTGGCCCAAATGGCTGGTTGATAATATCCCCCAAAACGTTTTGGCCACTTTGGTCCCCAAGTCTGCTGATTCCTATCAAAAACTCGGCAAGGTAGGAAGGGGAACNTATAGCAATGTATACAAAGCCCGAGATAAGGACACTGGAAAGGTTGTTGCTCTGAAGAAGGTGCGATTTGACACATCGGATTCTGAAAGCATCAAGTTCATGGCAAGAGAGATCGTGATACTGCAGATGCTGGATCACCCCAATGTCATCAAACTTGAAGGGCTTGCAACATCGAGGATGCAGTATAGTCTTTATCTGGTCTTTGATTACATGCAGTGCGACCTTACCAGAATTATCTCCCGCCTTGACACACTCACTGAACCACAGATCAAGTGTTACATGCGGCAGCTGCTTTTGGGGCTCCAGCATTGTCATGAGAGAGGAGTTATGCACCGAGATATTAAAGCTTCTAATCTGTTAATTGACAAAAGAGGGGTGCTAAAAATTGCAGATTTTGGGCTTGCACATTCTTTTGCTATTAAACCTGAAGGCCCTCTTACAAATCGAGTGGTGACACTTTGGTATAGAGCTCCTGAACTTCTTTTGGGTTCAACTGATTATGACTATAGCATTGATCTCTGGAGTGCNGGATGCTTGTTGGCTGAGATGTTTGTTGGAAGACCAATTATGCCTGGGAGGACAGAGGTTGAACAGCTTCACATGATCTTCAAACTTTGTGGTTCCCCTTCAGGGGATTACTGGATGAAAATGAAGCTAATGACAAGCTTCCGTCCACCACAACATTATAAAGCTAGTTATGAAGATAACTTTCGGGATTTTCCTCCCTCTACCCGTGCTCTCTTGACTACACTTCTTGATCTAGACTCTGAACATCGTGGCACTGCTGCCTCTGCCCTTGAAAGTGAATTCTTCAAATCTAGTCCATTAGCATGCGACATTTCAGAGTTACCAGTAATCTACAAAGGCGAGGATGAACGCTCACAAATTAAGAGACGCAAAAGGCGCAAAGGTTTGAGAAAAGGGCAAGTATCAAAAACAGGCACAGACACTTTAAGCCTGTCAGGAAGGAACCAAACTGCTGAACTACGCAGGAGAGATTTAGAACCATCAAAGGAGGAGAAGAGTATAGAACAAAACATGCAAGGTCAAGAAACGGGGAATAGTGGAAGCAGCAAATCATATTCATCAGTATTCATGAACGAAAGGAGCATTAGTGCATCATCTATATCCCCAGTTTTTNTCTCTAGTAGGGGGAAATCCCCCAAAACTGAGGGTCATCCTAATGCTCTTAAGAATATAAAGAACTACACCCTCTTGCAGGCATCCATAATTGATATCATCAATCGCAACGAAGGCAGTGATTTTGGTCAGTTTCGGAGGTCCTTTTCTANGTTGGATTTTCGGCTTGATCCAGAGAAGCTATCAAGTCTTTACGGATCAAATAGTAAGCTGGACCATGAAGTGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	389053	393241	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:4.5.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002264.1	PF00069.20	Pkinase	142	423	1.80E-69

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.184
SRR1783600	control	0.204
SRR1783602	moderate drought stress	0.373
SRR1811619	moderate drought stress	0.393

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.438
DRR006520	Root Summer glycyrrhizin high producing strain	0.522
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.931
DRR006524	Root Summer glycyrrhizin low producing strain	0.785
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.152
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.152

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.004
SRR2868004	Drought Stress(Tissue:root)	1.530
SRR2967015	Control (Tissue:root)	1.265

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.359
SRR9715740	Leave	0.069
SRR9715741	Leave	0.687
SRR9715739	Root	0.027
SRR9715742	Root	0.345
SRR9715743	Root	0.444

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.456
SRR8749028	MeJA induced 9h	0.380
SRR8749029	MeJA induced 9h	0.424
SRR8749030	Uninduced	1.844
SRR8749031	Uninduced	3.478
SRR8749032	Uninduced	2.453

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	1.474
SRR8400027	Control-Root	1.375