Gene detail information of Glyur000048s00002265.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G22140.1 | 2.00E-101 | essential meiotic endonuclease 1B |
| NR | XP_004503990.1 | 0 | PREDICTED: crossover junction endonuclease EME1B-like isoform X1 [Cicer arietinum] |
| Swissprot | tr|C5H8J1|EME1B_ARATH | 7.00E-147 | Crossover junction endonuclease EME1B |
| trEMBL | tr|G7LC63|G7LC63_MEDTR | 0 | Crossover junction endonuclease EME1 {ECO:0000313|EMBL:AET04622.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 394658 | 399828 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K10882 | EME1, MMS4 | EC:3.1.22.- | Homologous recombination | map03440 |
| Fanconi anemia pathway | map03460 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002265.1 | PF02732.10 | ERCC4 | 222 | 378 | 7.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.696 |
| SRR1783600 | control | 2.756 |
| SRR1783602 | moderate drought stress | 5.749 |
| SRR1811619 | moderate drought stress | 5.760 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.813 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.049 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.794 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.742 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.737 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.615 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.006 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.420 |
| SRR2868004 | Drought Stress(Tissue:root) | 6.442 |
| SRR2967015 | Control (Tissue:root) | 5.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.264 |
| SRR9715740 | Leave | 3.608 |
| SRR9715741 | Leave | 3.982 |
| SRR9715739 | Root | 0.241 |
| SRR9715742 | Root | 0.938 |
| SRR9715743 | Root | 1.406 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.810 |
| SRR8749028 | MeJA induced 9h | 12.835 |
| SRR8749029 | MeJA induced 9h | 14.703 |
| SRR8749030 | Uninduced | 8.672 |
| SRR8749031 | Uninduced | 4.950 |
| SRR8749032 | Uninduced | 4.138 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.559 |
| SRR8400027 | Control-Root | 9.646 |