Gene detail information of Glyur000048s00002269.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G39370.3 | 6.00E-83 | ubiquitin-specific protease 27 |
| NR | KHN29136.1 | 0 | Ubiquitin carboxyl-terminal hydrolase 27 [Glycine soja] |
| Swissprot | tr|Q9FPS0|UBP27_ARATH | 5.00E-96 | Ubiquitin carboxyl-terminal hydrolase 27 |
| trEMBL | tr|I1KTD3|I1KTD3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15330.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 425858 | 430422 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | USP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002269.1 | PF00443.24 | UCH | 69 | 531 | 1.50E-33 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.908 |
| SRR1783600 | control | 1.871 |
| SRR1783602 | moderate drought stress | 3.214 |
| SRR1811619 | moderate drought stress | 3.269 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.301 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.279 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 6.720 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.318 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.030 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.264 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.502 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.582 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.326 |
| SRR2868004 | Drought Stress(Tissue:root) | 5.347 |
| SRR2967015 | Control (Tissue:root) | 6.023 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.451 |
| SRR9715740 | Leave | 3.449 |
| SRR9715741 | Leave | 4.818 |
| SRR9715739 | Root | 3.315 |
| SRR9715742 | Root | 5.152 |
| SRR9715743 | Root | 4.987 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.151 |
| SRR8749028 | MeJA induced 9h | 4.822 |
| SRR8749029 | MeJA induced 9h | 3.780 |
| SRR8749030 | Uninduced | 1.597 |
| SRR8749031 | Uninduced | 1.505 |
| SRR8749032 | Uninduced | 1.412 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.285 |
| SRR8400027 | Control-Root | 7.018 |