Gene detail information of Glyur000048s00002274.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G21790.10ribonucleotide reductase 1
NRKHN34035.10Ribonucleoside-diphosphate reductase large subunit [Glycine soja]
COGYP_006872542.10ribonucleoside-diphosphate reductase, alpha subunit [Emticicia oligotrophica DSM 17448]
Swissprottr|Q9SJ20|RIR1_ARATH0Ribonucleoside-diphosphate reductase large subunit {ECO:0000303|PubMed:10542051}
trEMBLtr|Q8GZU9|Q8GZU9_SOYBN0Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048448206453199-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10807RRM1 EC:1.17.4.1 Purine metabolism map00230
Pyrimidine metabolismmap00240
Glutathione metabolismmap00480


Gene Ontology

biological_process

GO:0006260  DNA replication

GO:0055114  oxidation-reduction process


molecular_function

GO:0004748  ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002274.1PF03477.11ATP-cone1881.70E-14
Glyur000048s00002274.1PF00317.16Ribonuc_red_lgN1422121.90E-24
Glyur000048s00002274.1PF02867.10Ribonuc_red_lgC2157654.80E-201


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.662
SRR1783600control11.466
SRR1783602moderate drought stress10.473
SRR1811619moderate drought stress10.176

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.365
DRR006520Root Summer glycyrrhizin high producing strain10.313
DRR006521Root Winter glycyrrhizin high producing strain6.039
DRR006522Root Winter glycyrrhizin high producing strain5.954
DRR006523Root Summer glycyrrhizin low producing strain8.018
DRR006524Root Summer glycyrrhizin low producing strain8.175
DRR006525Leaf Summer glycyrrhizin high producing strain4.464
DRR006526Leaf Summer glycyrrhizin high producing strain4.534

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.171
SRR2868004Drought Stress(Tissue:root)14.196
SRR2967015Control (Tissue:root)15.317

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.792
SRR9715740Leave4.128
SRR9715741Leave6.350
SRR9715739Root2.335
SRR9715742Root9.611
SRR9715743Root7.824

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.679
SRR8749028MeJA induced 9h20.025
SRR8749029MeJA induced 9h17.443
SRR8749030Uninduced1.231
SRR8749031Uninduced1.204
SRR8749032Uninduced0.889

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root28.729
SRR8400027Control-Root23.300

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved