Gene detail information of Glyur000048s00002278.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64740.10cellulose synthase 6
NRXP_007159799.10hypothetical protein PHAVU_002G268200g [Phaseolus vulgaris]
COGYP_002489496.13.00E-17cellulose synthase [Arthrobacter chlorophenolicus A6]
Swissprottr|Q94JQ6|CESA6_ARATH0Cellulose synthase A catalytic subunit 6 [UDP-forming]
trEMBLtr|V7CR17|V7CR17_PHAVU0Cellulose synthase {ECO:0000256|RuleBase:RU361116}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048468569476631-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0016760  cellulose synthase (UDP-forming) activity

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002278.1PF14569.1zf-UDP291076.60E-43
Glyur000048s00002278.1PF03552.9Cellulose_synt36910880


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control172.525
SRR1783600control171.856
SRR1783602moderate drought stress101.095
SRR1811619moderate drought stress100.586

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain71.082
DRR006520Root Summer glycyrrhizin high producing strain70.324
DRR006521Root Winter glycyrrhizin high producing strain39.638
DRR006522Root Winter glycyrrhizin high producing strain38.914
DRR006523Root Summer glycyrrhizin low producing strain98.015
DRR006524Root Summer glycyrrhizin low producing strain97.629
DRR006525Leaf Summer glycyrrhizin high producing strain73.493
DRR006526Leaf Summer glycyrrhizin high producing strain73.442

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)168.503
SRR2868004Drought Stress(Tissue:root)114.299
SRR2967015Control (Tissue:root)104.181

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave108.076
SRR9715740Leave54.207
SRR9715741Leave65.622
SRR9715739Root92.200
SRR9715742Root240.886
SRR9715743Root211.075

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h76.387
SRR8749028MeJA induced 9h73.684
SRR8749029MeJA induced 9h62.402
SRR8749030Uninduced95.757
SRR8749031Uninduced18.400
SRR8749032Uninduced25.369

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root120.760
SRR8400027Control-Root181.241

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved