Gene detail information of Glyur000048s00002281.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G64730.16.00E-150Transducin/WD40 repeat-like superfamily protein
NRXP_007159800.10hypothetical protein PHAVU_002G268300g, partial [Phaseolus vulgaris]
COGYP_004050921.12.00E-40wd40 repeat, subgroup [Calditerrivibrio nitroreducens DSM 19672]
Swissprottr|Q8W1K8|MUT11_CHLRE1.00E-23Protein Mut11
trEMBLtr|V7CNU1|V7CNU1_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW31794.1} (Fragment)

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048486341490028-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002281.1PF00400.27WD4045825.90E-11
Glyur000048s00002281.1PF00400.27WD40891240.0033
Glyur000048s00002281.1PF00400.27WD401291668.70E-07
Glyur000048s00002281.1PF00400.27WD402222460.00097
Glyur000048s00002281.1PF00400.27WD402983346.50E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.609
SRR1783600control12.659
SRR1783602moderate drought stress25.336
SRR1811619moderate drought stress25.301

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain36.259
DRR006520Root Summer glycyrrhizin high producing strain36.404
DRR006521Root Winter glycyrrhizin high producing strain71.508
DRR006522Root Winter glycyrrhizin high producing strain69.549
DRR006523Root Summer glycyrrhizin low producing strain30.090
DRR006524Root Summer glycyrrhizin low producing strain29.926
DRR006525Leaf Summer glycyrrhizin high producing strain15.743
DRR006526Leaf Summer glycyrrhizin high producing strain15.408

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.992
SRR2868004Drought Stress(Tissue:root)18.582
SRR2967015Control (Tissue:root)22.311

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.894
SRR9715740Leave21.559
SRR9715741Leave10.569
SRR9715739Root21.844
SRR9715742Root8.098
SRR9715743Root11.668

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h44.647
SRR8749028MeJA induced 9h25.014
SRR8749029MeJA induced 9h35.188
SRR8749030Uninduced16.638
SRR8749031Uninduced18.362
SRR8749032Uninduced21.851

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root30.366
SRR8400027Control-Root24.475

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved