Gene detail information of Glyur000049s00003114.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G01860.2 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_004494459.1 | 0 | PREDICTED: uncharacterized protein LOC101511417 [Cicer arietinum] |
| COG | YP_003265882.1 | 3.00E-10 | serine/threonine protein kinase with WD40 repeats [Haliangium ochraceum DSM 14365] |
| Swissprot | tr|Q3Y8L7|DAW1_CHLRE | 8.00E-08 | Dynein assembly factor with WDR repeat domains 1 |
| trEMBL | tr|G7KTS0|G7KTS0_MEDTR | 0 | Transducin/WD-like repeat-protein {ECO:0000313|EMBL:AES82250.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 77224 | 86435 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003114.1 | PF00400.27 | WD40 | 161 | 196 | 0.0065 |
| Glyur000049s00003114.1 | PF00400.27 | WD40 | 280 | 314 | 3.40E-06 |
| Glyur000049s00003114.1 | PF00400.27 | WD40 | 332 | 362 | 2.20E-05 |
| Glyur000049s00003114.1 | PF00400.27 | WD40 | 815 | 855 | 0.0035 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.787 |
| SRR1783600 | control | 1.814 |
| SRR1783602 | moderate drought stress | 2.445 |
| SRR1811619 | moderate drought stress | 2.440 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 2.078 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.018 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.062 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.849 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.113 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.095 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.806 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 4.705 |
| SRR2868004 | Drought Stress(Tissue:root) | 4.611 |
| SRR2967015 | Control (Tissue:root) | 5.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.279 |
| SRR9715740 | Leave | 3.100 |
| SRR9715741 | Leave | 2.268 |
| SRR9715739 | Root | 0.848 |
| SRR9715742 | Root | 4.519 |
| SRR9715743 | Root | 3.500 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.926 |
| SRR8749028 | MeJA induced 9h | 3.105 |
| SRR8749029 | MeJA induced 9h | 2.730 |
| SRR8749030 | Uninduced | 1.412 |
| SRR8749031 | Uninduced | 1.013 |
| SRR8749032 | Uninduced | 0.958 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.105 |
| SRR8400027 | Control-Root | 6.813 |