Gene detail

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Gene detail information of Glyur000049s00003124.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G02460.1	7.00E-171	Pectin lyase-like superfamily protein
NR	XP_007163216.1	0	hypothetical protein PHAVU_001G215900g [Phaseolus vulgaris]
COG	YP_001179193.1	1.00E-29	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|Q949Z1\|PGLR4_ARATH	0	Polygalacturonase At1g48100 (Precursor)
trEMBL	tr\|V7D135\|V7D135_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW35210.1}

Sequence

Transcript Sequence

>Glyur000049s00003124.1
CAGTAATTCCTCATTTTAAGTGTTGATGTATGTCGCGGTGGCTTCCAAACGAGTCTCTTCCAAACAGAGACATAGATGTCGAACACAGAAGAAGAAAAGGATAAGCACCATTGGATCTAACTTCTCTTCTNGCCGATTATCACTCTCAGACATTGTTGGATTCTTGAAGAACCAGAAAAAAATGGAAAAGCAAGAATACAAGATCAGGACATTTAAGAGCAAACNCGCCAAAAAGCTCCCAAGAATACAATACCCGATCCGAAACCCGGAACTGCAACCCGTCTCGGTGTCATTCAAGCCGGTGCAGACCCCTTAGATCTCCCATGGTGGAGTCGTCATATGCCGCCGAGGACTGCTTCTTCGTCGGGAAAGATGACAGAGGAAGACGAAATGCTGCCAGAGCCCNGAGTGAGCAATTCTGGGATCAAACTAAAATTTCACAAAATATGACACAGGACATTACATACCGGAAATCTCAACCTTACAGTATTGGAGGGTAGAAAATACATTGTGTACCAGTACACATTTTTTTTTTTTTAAGATCATTTACACATTTTTTTAGGTGTGCACCCTAGTGAACGTCTTTGCTACTGAATTGAATGAATTAAAAAAAAACCGAAATGAGTGTTGCTCGGTCGGTAACACATGCTGAATTTGTGGGTAGTTAGACCAAAGTTCGATCGATACCTACAAACAATACTAAAAACTGTCATAATTAGCGGAAGGAATTGAGAGACCCTGACCACTTAGCAGAAACAGTGGCATACTTAAGAACTCTGATCGAGTGGAAGCAATGCAAAGCAGAATGATGAATTTTCAGCTTCAGAGTGGATGGACGGTTACAGTTACAGATATATGACATTGTGTATTTAAAATGCGAATTCAATAGTCTAATTTAATTTGTAGACACGTCCTAACTACCTCTTCTCAGAACTGCATTTATATATTTTTAAAACCGTGGAATGACAAACATGCTTCTAGGTATTATATTTACACTGTTATAATGCTAACATTACTAGCTAGTCATTCGCATTCCATGAACCTAACTTTTCGTATGTACATACATGATACATGTGTTAGAATAACAAAACCAGGGATGGGACCAAAAGAAAATGGCAGTTATGGGAAGAACATGGCAGGGTTATCGATTGCCCACTAATCTGATTTCTCGTTATTCCGTTTTGCTCTTTTCAGAACAGTCATGTATATGCAGACTCCACATTATCTAAAGCAAGGCCATCACTTATGAGGTATATTTGTCGTTTCCCACTCCGAATGCCATTAAAAAATTGGTAACATGAAGTTGAATCTTTAGCAGATGTTCCACTATGACTTTATTATATATAGTAAGTTTAGCCTTTTGATTCTGCATGCACTCCAAGGGCCAAAACTTAGTTAAATTAACTTGTGTTCTAGTGCTTATAGTGGTCACTTCTATAGTATTCTTTCTACATCCCGGAACTCAGGTTGCCTAATTANTCAATAATTAGTGAGTGTTTATTCCTTAATTTCACCTAGTTGTTGTTGGTAGTGAAGTGACTACAGTGACAAACCCAATTGTTCCCAGGTTTTCAAGTTTTAGAGACCAGGCAGTTATAGATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTGGCTTCAACATTTTTGTTTTTTTCTCTACCACTGCTAGAAAATGTTCAGAATGAAGCATTCTTATATTTTATCACTGGCATTTTGTATGTTTTTCCTTACTTTGTTTATTTTCGTCCAAGCTAGACATCATTCTCATTCCCATACAAAACACAAGCACTCACATTCTCATAAATCATCCAAGGCTTCACAACCACCTGCTCCACAGCCTGCACCTCCTAGCCCCCCTCATAACAATAACTACTNCAATGCATCTGGAATTTTTGATGTAAGAACATTTGGGGCCATGGGAGATGGAANAGCAGATGATACAGAGTCATTTAAGATGGCATGGGACACTGCCTGCCAAAGTAGTGAATCAGAAACTAATGTTATCCTTGTTCCCCAAGGTTTCTCCTTCATCATTCAGTCTACCATCTTCACCGGTCCTTGTCAAGGTGGCTTAGTGTTGAGGGTGGATGGTACTCTTATGCCACCTGATGGACCTGAATCTTGGCCAAAGAACAACAGTAGGCACCAGTGGCTGGTTTTTTACAGAATCAATGGAATGTCACTGGAAGGAGGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTTCCCTGTAAGCCTCACAAGGGACCTCATGGGACAACATCCGCAGGACCTTGTGATAGCCCAATTGCCATAAGGTTCTTTATGAGCTCCAACTTGACTGTGCAAGGACTTAGGGTGAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAATAACGTTCATATAGAATCAATCTACATAACAGCCCCAAAACTAAGCCCCAACACTGATGGAATTCACATAGAAAATACCAATGATGTGAAAATATATAATTCTCTGATTTCTAATGGTGATGACTGTGTGTCCATTGGATCCGGCTGCTATGATGTCGATATAAAGAACATTACATGTGGACCTAGTCATGGAATCAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCATGTGTTTCAAACATCACGGTGAGGGACTCAATCATAAAAGTTTCAGATAATGGGGTTAGAATCAAGACTTGGCAAGGTGGATCAGGATCGGTATCTGGGGTGACATTCAGTAATATCCACATGGTTAGTGTAAGAAACCCCATCATAATTGACCAGTTCTATTGCCTCTCAGAAGACTGCACCAACAAGACCTCAGCAGTATTTGTATCAAACATTCTNTACACAAGCATCAAGGGAACATATGATATAAGGAGCCCACCTATGCGTTTTGCCTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCGGATATTGAGCTTCTTCCAGCTCAAGGAGATGTAGTGCATGACCCTTTCTGTTGGAATGCTTATGGAGATTTGCAGACACTAACTATTCCACCAGTCTCTTGCTTGCTGGAGGGCACTCCTCAATCAGTGCTAGACTATGGCAGAGATCATTGCTAACCCACTAGATTAATTCTGTGAAGCAAAAATGTGTGCATGTAATATAATGTATGACATGGATCATTGCTAATGATTTTGAATCTTATGTTGTTATTGTTGAGGATG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	127605	131545	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH28

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004650 polygalacturonase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003124.1	PF00295.12	Glyco_hydro_28	107	424	1.10E-90

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.299
SRR1783600	control	1.272
SRR1783602	moderate drought stress	3.782
SRR1811619	moderate drought stress	3.768

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.233
DRR006520	Root Summer glycyrrhizin high producing strain	2.199
DRR006521	Root Winter glycyrrhizin high producing strain	3.435
DRR006522	Root Winter glycyrrhizin high producing strain	3.381
DRR006523	Root Summer glycyrrhizin low producing strain	1.625
DRR006524	Root Summer glycyrrhizin low producing strain	1.624
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.418
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.363

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.377
SRR2868004	Drought Stress(Tissue:root)	0.886
SRR2967015	Control (Tissue:root)	1.291

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.893
SRR9715740	Leave	1.094
SRR9715741	Leave	2.235
SRR9715739	Root	0.579
SRR9715742	Root	1.689
SRR9715743	Root	1.829

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.202
SRR8749028	MeJA induced 9h	0.799
SRR8749029	MeJA induced 9h	0.354
SRR8749030	Uninduced	1.309
SRR8749031	Uninduced	0.805
SRR8749032	Uninduced	0.556

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.411
SRR8400027	Control-Root	2.004