Gene detail information of Glyur000049s00003134.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G49620.1 | 9.00E-49 | myb domain protein 78 |
| NR | BAH83498.1 | 1.64E-95 | MYB12 transcription factor a [Glycine max] |
| Swissprot | tr|Q9LDE1|MY108_ARATH | 2.00E-56 | Transcription factor MYB108 |
| trEMBL | tr|C5NU12|C5NU12_SOYBN | 6.00E-96 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38040.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00049 | 194769 | 201741 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MYB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000049s00003134.1 | PF00249.26 | Myb_DNA-binding | 81 | 124 | 1.50E-10 |
| Glyur000049s00003134.1 | PF00249.26 | Myb_DNA-binding | 289 | 326 | 2.00E-06 |
| Glyur000049s00003134.1 | PF00249.26 | Myb_DNA-binding | 332 | 375 | 5.20E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.032 |
| SRR1783600 | control | 0.022 |
| SRR1783602 | moderate drought stress | 0.070 |
| SRR1811619 | moderate drought stress | 0.070 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.658 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.686 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.729 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.407 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.676 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.590 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.400 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.402 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.380 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.200 |
| SRR2967015 | Control (Tissue:root) | 1.168 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.082 |
| SRR9715740 | Leave | 0.020 |
| SRR9715741 | Leave | 0.077 |
| SRR9715739 | Root | 0.727 |
| SRR9715742 | Root | 0.819 |
| SRR9715743 | Root | 1.123 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.076 |
| SRR8749028 | MeJA induced 9h | 0.128 |
| SRR8749029 | MeJA induced 9h | 0.424 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.083 |
| SRR8749032 | Uninduced | 0.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.273 |
| SRR8400027 | Control-Root | 0.137 |