Gene detail information of Glyur000049s00003138.2


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47240.20AMP-dependent synthetase and ligase family protein
NRXP_006577175.10PREDICTED: long chain acyl-CoA synthetase 1-like isoform X1 [Glycine max]
COGYP_005846047.18.00E-56Long-chain acyl-CoA synthetase [Ignavibacterium album JCM 16511]
Swissprottr|O22898|LACS1_ARATH0Long chain acyl-CoA synthetase 1
trEMBLtr|I1JQU3|I1JQU3_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA03G38000.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00049217813223040+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01897ACSL, fadD EC:6.2.1.3 Fatty acid metabolism map01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000049s00003138.2PF00501.23AMP-binding1753777.60E-30


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.351
SRR1783600control0.340
SRR1783602moderate drought stress0.256
SRR1811619moderate drought stress0.267

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain1.276
DRR006520Root Summer glycyrrhizin high producing strain1.258
DRR006521Root Winter glycyrrhizin high producing strain22.444
DRR006522Root Winter glycyrrhizin high producing strain20.907
DRR006523Root Summer glycyrrhizin low producing strain8.245
DRR006524Root Summer glycyrrhizin low producing strain9.327
DRR006525Leaf Summer glycyrrhizin high producing strain0.350
DRR006526Leaf Summer glycyrrhizin high producing strain0.350

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)2.046
SRR2868004Drought Stress(Tissue:root)2.730
SRR2967015Control (Tissue:root)4.727

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.133
SRR9715740Leave2.069
SRR9715741Leave2.873
SRR9715739Root0.052
SRR9715742Root1.714
SRR9715743Root1.123

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h80.831
SRR8749028MeJA induced 9h151.915
SRR8749029MeJA induced 9h249.653
SRR8749030Uninduced92.574
SRR8749031Uninduced186.992
SRR8749032Uninduced281.217

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root4.606
SRR8400027Control-Root3.090

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved