Gene detail

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Gene detail information of Glyur000049s00003141.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01950.1	3.00E-144	glycerol-3-phosphate acyltransferase 3
NR	XP_003553672.2	0	PREDICTED: probable glycerol-3-phosphate acyltransferase 2-like [Glycine max]
Swissprot	tr\|Q9SYJ2\|GPAT3_ARATH	0	Probable glycerol-3-phosphate acyltransferase 3
trEMBL	tr\|I1NBE5\|I1NBE5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40590.1}

Sequence

Transcript Sequence

>Glyur000049s00003141.1
ATGGCTAGAATGGTCTTCGCCACGTTTTTCTTAAAATATCTCTTCATCTTTTGGCACCATTTTCTCTTAAAGGGCTTCCGCAGAACTAGTAGCAACAATAATAATAACACCTTTGCAACCCAATTTAAATGCCAAAAGTACNCCTCTCTGCTTCACCGTTCAGACCTCAACGACTGCACTCTCATTTTTGACGTAGAAGGTGCTTTGTTGAAATCTTCCTCAGTGTTCCCATACTTCATGCTCGTTGCTTTTGAAGCAGGATGGATCCTGAGAGCCATTGTTCTGATTCTTCTATACCCATTTGTTTGTTTAGCAGGATATGAGGTGGGGTTGAAGATAATGATCATGATATGCTTCTTTGGGATTAAAGCAGAGAGCTTTAGAGTGGGAAGGGCTGTTCTGCCCAAGTTCTTGTTGGAGGATGTTGGTTCGGAAATATTTGAGGTTGTGACCAATAAAGGTGGGAAGAAAGTGGGTGTCAGCAAGTTGCCTCGTGTGATGGTGGAAACCTTCTTGAGAGAGTATTTGGAGATTGACTTTGTGTTGGGGAGGGAGCTGAGAGTGTTCCGTGGGTACTTCGTGGGGTTGATCGAGGAGGGAACGGATGATGTGAATGTTTTGGACTTTGTTCACGAAGGGAACGGATCGTGTTCTGACATTATTGGAATTTCAGGACGTAAGGGTCTTGACCACAAGTTCTTTTCTCAATGCAAGGAAGTCTATATGGTGGAGGAAGCTGACAAGAAAAGCTGGGAGAAGCTAGCCAAAGAAAAATACCCAAAACCACTCATCTTCCATGATGGAAGATTGGCTTTCACACCCACCCTAGCGAGTTCTCTGGCTACGTTAATGTGGGTTCCGTGTGGTTTAATCCTTGCCATAATTAGAATTATAACAGGACTCTCACTTCCCTATAAAATCTCAGTACCTCTTTCGGTAATAAGTGGGCTTCGCATGACAGTTGCAATGCCCAACAACAACCATAAGCCCAAGCCCAAGCCCAAGCCCAAAGGGGAACTTTTTGCGTGCAACCACAGAACACTGCTAGATCCTCTCTTCATCTCGTGTTTGTTGAGAAGGGACTTAGTGGCCGTAACATACAGCGTAAGTAGAATGTCGGAGATACTGTCACCAATCAAAACGGTGCGTTTAACAAGGAACCGCGACGAGGATGCGAAGATGATGAAGAGGTTGTTGGAAAAAGGGGACCTAGTGGTGTGCCCAGAAGGGACCACTTGTAGAGAGAGGTATTTATTGAGGTTCAGTCCTCTGTTTGCTGAGATGTGCGATGAAATAACCCCCGTTGCTATTGAGAGCCACGTGGGCATGTTCCACGGTACAACCGCAGGGGGTTTTAAGTCCTTTGACTCGCTCTTCTTTTTCATGAATCCGTTCCCTGTGTATGAGGTTCGGTTTCTAGAGAAAGTGTCCACCGCCACTAATTGTAATAATAATAATAATAATAATAGTAATGAGGGCGCGAGATTATTTGAAGTGGCTAACCGCATCCAAACAAAGATTGGAATGGCTCTGGGATTTGAGTGCACTAAACTTACCAGGAAAGATAAGTACTTGGTTTTGGCTGGTAACGATGGCACAGTTTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	226036	228398	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13508	GPAT	EC:2.3.1.15	Glycerolipid metabolism	map00561
K13508	GPAT	EC:2.3.1.15	Glycerophospholipid metabolism	map00564

Gene Ontology

biological_process
GO:0008152 metabolic process

molecular_function GO:0016746 transferase activity, transferring acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003141.1	PF01553.16	Acyltransferase	336	429	2.10E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.091
SRR1783600	control	0.075
SRR1783602	moderate drought stress	0.047
SRR1811619	moderate drought stress	0.083

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.067
DRR006520	Root Summer glycyrrhizin high producing strain	0.066
DRR006521	Root Winter glycyrrhizin high producing strain	0.139
DRR006522	Root Winter glycyrrhizin high producing strain	0.166
DRR006523	Root Summer glycyrrhizin low producing strain	0.138
DRR006524	Root Summer glycyrrhizin low producing strain	0.167
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.859
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.907

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.041
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.000

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	11.148
SRR9715740	Leave	1.541
SRR9715741	Leave	2.660
SRR9715739	Root	0.203
SRR9715742	Root	0.038
SRR9715743	Root	0.192

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.063
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.079
SRR8749031	Uninduced	0.046
SRR8749032	Uninduced	0.035

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.267
SRR8400027	Control-Root	0.661