Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000049s00003149.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G01970.1	0	stachyose synthase
NR	XP_004494437.1	0	PREDICTED: stachyose synthase-like [Cicer arietinum]
COG	YP_004464004.1	5.00E-23	raffinose synthase [Mahella australiensis 50-1 BON]
Swissprot	tr\|Q93XK2\|STSYN_PEA	0	Stachyose synthase (Precursor)
trEMBL	tr\|I1NBD9\|I1NBD9_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G40550.1}

Sequence

Transcript Sequence

>Glyur000049s00003149.1
CCACTCACTTCTTCAAACCAAGTAACTGACCCATTTGTGTAGAGTCCTTTTCCTGTGAGATCTCCCTTCACCGACTACCCATTATTACTCTCCCNGCTCGTCATTACTAATTAGTAATTACTAATAAATCGGCACTATTTTCCGTTATAATTTTCTTCCATTTAAACAGCTAAAATCACTCCCTCCTTTGAAAACCTTCCATTCTAGTTCTAGTAAGAAAGAAAATTGCTTTTTTTGTTTCTATTCGGTTCTGCCATATACACACACAATACCCCGAGTAGTTCCCGAGATTCCAGAATCCTCAGACATCAATCACTAGAGTGTGTTAAATTGTCCCATCCTGTTTATTTCTTTCCCTTTTTACCAGGTTTTTAAATTTGTTGTAACCTTTTATTCAAAGATTCGTTCTCAATTAAAAAAAAAAACAGAGAGAGAGAGATTCGCCCAGCGTCGAGCAATCTGGTGTTTTATATATACCCCACCCCAGAGCAAGCTTTCTTCACTTGTCAAAGCAAGGTCCCTTGTCTCTCTCTCTCTTGTCTCTGTTTCATCCTCTGTTTTTCACCTCCTCTGTTTCGTTCCCTTATCCATTTCCCATGGCTCCACCCAATGACCCATCCACCGTGGAACTCGTCAAGTCCGAGTCTTTGGAAACCATTTTCGATTTATCCGACGGAAAGTTCACCGTTAGAGGCGTGCCGTTACTCTCTNATGTCCCTGAGAATGTCTCTTTCACTCCCTTCTCCTCTGTTTGCCAACAATCCCCTGAATCCGATGCCCCACCTTCACTCCTTCAGCGCGTCCTTGCTCTCTCTCACAAAGGTGGCTTCTTTGGTTTCTCCCAGGATAACCCTTCTGATAGGTTGATGAATTCCCTGGGTAGTTTCAGTAACAGAGACTTCCTCAGCATCTTCAGGTTCAAAACGTGGTGGTCTACCCAATGGGTGGGTAATTCTGGTTCCGATTTACAAATGGAAACCCAATGGGTACTTTTTAACATTCCTGAAATAAAATCCTATCTGTTAATCATTCCCATCATTGAAGCAAGTTTCAGGTCTGCACTCCACCCTGGCTCTGATGGCCACGTCATGATTTGTGCTGAGAGTGGTTCTACCCAAGTGAGAGCATCAAAATTCGATGCAATTGCCTATGTTCACTTGTCTGAAAATCCTTACAACTTGATGAGAGAGGCCTATAGTGCTCTGAGGGTTCGCCTCAACAGTTTCAGGCTTTTGGAGGAGAAAACGCTGCCNAATTTGGTTGANAAGTTCGGTTGGTGCACCTGGGATGCTTTCTATTTAACCGTGGACCCTGTTGGGGTTTGGAATGGCCTCAAGGATTTTGCTGAAGGTGGCGTGGCTCCGAGATTTGTCATCATCGACGATGGGTGGCAGAGCATTAATTTGGACGGTTGTGATGACCCCAATGAGGACGCAAAGAACCTTGTTCTGGGTGGTGAACAAATGACGGCTAGGCTTCATAGGCTCGATGAAGGTGACAAGTTCAAAAGATACAAAGCTGGCCTTTTGTTGGGTCCTAATGCTCCTCCTTTCAACCCAAAGACGGNTAAGGAGTTGATCGCTAAGGGAATTGAACACGAGCATTTGGAGAGGCAAAGGGAAGAAGTTATTCTCTCTGGGGGTGGTTCCAATTTGGCTGAGATTGAGTCAAAGATCAAACAGGTAATAAAAGAAATCGATGATCTCTTTGGGGGAGAACAAAGCGAAAGTGAAAGCAAAGGAGAAGAATGTGGAAGCTGTTGTTGCAAAGCACAAGAGGAGTGTAATGGGTTGAGGGCTTTCACGAGGGATTTGAGGACCAAATTCAAATGTTTGGATGATGTTTACGTGTGGCATGCACTTTGTGGTGCGTGGGGTGGTGTGAGGCCAGGAACCACACACCTCAATTCGAAGATTGTTCCTTGCAAACTCTCCCCTGGACTTGATGGGACTATGCATGATCTTGCTGTGGTTAACATCGTGAAAGGTTCCATTGNGCTTGTTCATCCTGATCAAGCTAATGACTTCTATGACTCCATGCACTCTTATCTTGCCCAATCTGGTATCACTGGAGTCAAAGTTGATGTCATTCACACTCTTGAATATGTGTGTGATGAATATGGAGGCAGAGTTGAGCTTGCCAAGGCTTACTATGAAGGGTTGACAAACTCCATTGCCAAGAACTTCAATGGAAATGGAATCATTGCTAGCATGCAGCAGTGCAACGACTTTTTCTTCCTCGGAACCAAACAAGTTGCCATGGGAAGAGTTGGGGATGACTTTTGGTTCCAAGATCCCAATGGAGATCCAATGGGAGTGTTTTGGTTACAAGGGGTACACATGATTCACTGTTCCTACAATAGCTTGTGGATGGGGCAGATGATTCAGCCCGATTGGGACATGTTCCAATCGGATCATGTGTGTGCCAAATTCCATGCAGGTTCAAGGGCTATTTGTGGTGGTCCAGTCTATTTGAGTGATAATGTTGGATCCCATGACTTTGNTTTGATTAAGAAGCTTGTGTTCCCTGATGGTACCGTACCCAAGTGCATCTATTTCCCCCTTCCAACCAGAGATTGTCTCTTCAAGAACCCTCTCTTCGACCAAAAAACTGTTCTCAAAATTTGGAACTTCAACAAGTATGGAGGAGTGATTGGTGCTTTCAACTGTCAAGGGGCAGGGTGGGACCCCAATGTGCATAAGTTCAGGGGTTTCCCTGAGTGCTACAAGCCAATATCTGGTACTGTGCATGTAACTGAGGTTGAATGGGATCAGAAGAAAGAAGCATCCCACATGGGTAAGGCAGAGGAATACNTAGTGTACCTCAATCAGGCTGAAGAACTGTGCTTGATGACACCCAAATCTGAACCAATCCAATTCACCATCCAACCTTCGACCTTTGAGCTATACAGCTTTGTCCCAGTCACAAAGCTAGGCGGCATCAAATTTGCACCAATTGGGCTGACAAACATGTTCAACAATGGTGGGACAATTCTAGAATTGGAACATGTTGAGAGTGGAGCTGAGGTTGGTGCTAAGCTTAAGGTCAAAGGTGGTGGGAATTTCCTTGCTTACTCAAGTGAATCCCCAAAGAAGTTCCAACTGAATGGTTCTGAGGTTGCTTTTGAGTGGAAGCCTGATGGAAAATTGACCCTCAACCTTCCTTGGATTGAAGAGGCTGGATGGGTTTCTGATTTGGCAATTTTCTTCTAGATATTATATATGTTGTGGTTCTTAAGTTTATATAGGTTTGAGTGCTGTTTGTCATAAACTGGTATAATCCTTTTGTTTAAAAAATTGTTGGGAACTTAGTTTTTTTTTTTTTTTACTTTACTAAGTAGCTATTGGGATTGGTTCATTGTAATTAACCTTCTCCTGTGTATCGCTTGATACTTTTTTTGGTTGATCTTATAAAGTA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00049	279926	283709	-

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GH36

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K06611	E2.4.1.67	EC:2.4.1.67	Galactose metabolism	map00052

Gene Ontology

molecular_function
GO:0003824 catalytic activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000049s00003149.1	PF05691.7	Raffinose_syn	22	855	0

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	10.498
SRR1783600	control	10.426
SRR1783602	moderate drought stress	9.368
SRR1811619	moderate drought stress	9.255

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.978
DRR006520	Root Summer glycyrrhizin high producing strain	7.008
DRR006521	Root Winter glycyrrhizin high producing strain	59.303
DRR006522	Root Winter glycyrrhizin high producing strain	57.909
DRR006523	Root Summer glycyrrhizin low producing strain	8.300
DRR006524	Root Summer glycyrrhizin low producing strain	8.322
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.544
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.568

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	10.430
SRR2868004	Drought Stress(Tissue:root)	12.343
SRR2967015	Control (Tissue:root)	12.526

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	1.561
SRR9715740	Leave	2.014
SRR9715741	Leave	1.150
SRR9715739	Root	16.236
SRR9715742	Root	26.436
SRR9715743	Root	26.083

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	7.381
SRR8749028	MeJA induced 9h	14.782
SRR8749029	MeJA induced 9h	16.610
SRR8749030	Uninduced	1.818
SRR8749031	Uninduced	1.455
SRR8749032	Uninduced	3.569

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	13.325
SRR8400027	Control-Root	14.442