Gene detail information of Glyur000049s00003152.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G47330.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_007163191.10hypothetical protein PHAVU_001G214100g [Phaseolus vulgaris]
COGNP_355291.16.00E-88ATP-dependent RNA helicase [Agrobacterium fabrum str. C58]
Swissprottr|O22907|RH24_ARATH0DEAD-box ATP-dependent RNA helicase 24
trEMBLtr|V7D110|V7D110_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW35185.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00049307695310875-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12835DDX42, SF3B125 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000049s00003152.1PF00270.24DEAD2634346.70E-46
Glyur000049s00003152.1PF00271.26Helicase_C5035798.90E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.915
SRR1783600control36.338
SRR1783602moderate drought stress58.466
SRR1811619moderate drought stress57.892

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain34.839
DRR006520Root Summer glycyrrhizin high producing strain34.261
DRR006521Root Winter glycyrrhizin high producing strain37.986
DRR006522Root Winter glycyrrhizin high producing strain37.040
DRR006523Root Summer glycyrrhizin low producing strain39.149
DRR006524Root Summer glycyrrhizin low producing strain39.401
DRR006525Leaf Summer glycyrrhizin high producing strain20.706
DRR006526Leaf Summer glycyrrhizin high producing strain20.584

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)47.664
SRR2868004Drought Stress(Tissue:root)51.515
SRR2967015Control (Tissue:root)54.156

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.156
SRR9715740Leave23.940
SRR9715741Leave26.486
SRR9715739Root18.424
SRR9715742Root39.983
SRR9715743Root35.555

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h17.706
SRR8749028MeJA induced 9h27.701
SRR8749029MeJA induced 9h16.784
SRR8749030Uninduced17.137
SRR8749031Uninduced19.944
SRR8749032Uninduced17.815

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root41.489
SRR8400027Control-Root41.210

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved