Gene detail information of Glyur000049s00003156.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G02560.12.00E-122nuclear encoded CLP protease 5
NRXP_003625978.19.15E-169ATP-dependent Clp protease proteolytic subunit [Medicago truncatula]
COGYP_001869446.12.00E-81ATP-dependent Clp protease proteolytic subunit ClpP [Nostoc punctiforme PCC 73102]
Swissprottr|Q9S834|CLPP5_ARATH1.00E-156ATP-dependent Clp protease proteolytic subunit 5, chloroplastic (Precursor)
trEMBLtr|G7KSU5|G7KSU5_MEDTR3.00E-169ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00049332870336537+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000049s00003156.1PF00574.18CLP_protease1112782.50E-74


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control74.102
SRR1783600control76.559
SRR1783602moderate drought stress67.749
SRR1811619moderate drought stress68.850

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain76.645
DRR006520Root Summer glycyrrhizin high producing strain75.361
DRR006521Root Winter glycyrrhizin high producing strain95.737
DRR006522Root Winter glycyrrhizin high producing strain93.398
DRR006523Root Summer glycyrrhizin low producing strain92.135
DRR006524Root Summer glycyrrhizin low producing strain93.461
DRR006525Leaf Summer glycyrrhizin high producing strain168.984
DRR006526Leaf Summer glycyrrhizin high producing strain169.120

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)66.359
SRR2868004Drought Stress(Tissue:root)66.317
SRR2967015Control (Tissue:root)66.277

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave206.981
SRR9715740Leave257.278
SRR9715741Leave185.127
SRR9715739Root55.357
SRR9715742Root55.726
SRR9715743Root55.038

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.317
SRR8749028MeJA induced 9h54.567
SRR8749029MeJA induced 9h51.910
SRR8749030Uninduced36.063
SRR8749031Uninduced24.721
SRR8749032Uninduced24.738

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root81.710
SRR8400027Control-Root78.518

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved