Gene detail information of Glyur000050s00005679.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G60910.1 | 1.00E-78 | AGAMOUS-like 8 |
| NR | AFI08227.1 | 5.55E-109 | MADS-box protein [Pisum sativum] |
| Swissprot | tr|Q38876|AGL8_ARATH | 3.00E-101 | Agamous-like MADS-box protein AGL8 |
| trEMBL | tr|I1U3J9|I1U3J9_PEA | 2.00E-109 | MADS-box protein {ECO:0000313|EMBL:AFI08227.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 33713 | 40070 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005679.1 | PF00319.13 | SRF-TF | 9 | 59 | 7.70E-28 |
| Glyur000050s00005679.1 | PF01486.12 | K-box | 75 | 173 | 1.70E-30 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.080 |
| SRR1783600 | control | 1.159 |
| SRR1783602 | moderate drought stress | 1.341 |
| SRR1811619 | moderate drought stress | 1.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.695 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 11.596 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.281 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.316 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.650 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.642 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.322 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.711 |
| SRR9715740 | Leave | 1.357 |
| SRR9715741 | Leave | 3.333 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.334 |
| SRR9715743 | Root | 0.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.320 |
| SRR8400027 | Control-Root | 0.304 |