Gene detail information of Glyur000050s00005680.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G15800.1 | 4.00E-55 | K-box region and MADS-box transcription factor family protein |
| NR | XP_007155209.1 | 2.70E-139 | hypothetical protein PHAVU_003G182800g [Phaseolus vulgaris] |
| Swissprot | tr|Q39685|CMB1_DIACA | 7.00E-96 | MADS-box protein CMB1 |
| trEMBL | tr|V7CCY2|V7CCY2_PHAVU | 1.00E-139 | Uncharacterized protein {ECO:0000313|EMBL:ESW27203.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 46530 | 51712 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | MIKC |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005680.1 | PF00319.13 | SRF-TF | 9 | 59 | 2.10E-29 |
| Glyur000050s00005680.1 | PF01486.12 | K-box | 83 | 172 | 3.10E-25 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.012 |
| SRR1811619 | moderate drought stress | 0.088 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.974 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 17.881 |
| SRR9715740 | Leave | 10.802 |
| SRR9715741 | Leave | 6.301 |
| SRR9715739 | Root | 0.062 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.072 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.000 |
| SRR8400027 | Control-Root | 0.000 |