Gene detail information of Glyur000050s00005683.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G69170.1 | 1.00E-44 | Squamosa promoter-binding protein-like (SBP domain) transcription factor family protein |
| NR | KHN15202.1 | 0 | Squamosa promoter-binding-like protein 6 [Glycine soja] |
| Swissprot | tr|Q94JW8|SPL6_ARATH | 9.00E-50 | Squamosa promoter-binding-like protein 6 |
| trEMBL | tr|V7CAP8|V7CAP8_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW27204.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 74987 | 79206 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SBP |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005683.1 | PF03110.9 | SBP | 161 | 236 | 1.90E-39 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.294 |
| SRR1783600 | control | 1.322 |
| SRR1783602 | moderate drought stress | 4.766 |
| SRR1811619 | moderate drought stress | 4.648 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.229 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.283 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.738 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.787 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.445 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.146 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.382 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.380 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.518 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.655 |
| SRR2967015 | Control (Tissue:root) | 2.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.111 |
| SRR9715740 | Leave | 0.738 |
| SRR9715741 | Leave | 0.591 |
| SRR9715739 | Root | 2.105 |
| SRR9715742 | Root | 6.701 |
| SRR9715743 | Root | 4.133 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.501 |
| SRR8749028 | MeJA induced 9h | 0.296 |
| SRR8749029 | MeJA induced 9h | 0.579 |
| SRR8749030 | Uninduced | 0.147 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.644 |
| SRR8400027 | Control-Root | 4.003 |