Gene detail information of Glyur000050s00005704.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G29900.1 | 2.00E-107 | Presenilin-2 |
| NR | XP_004508672.1 | 0 | PREDICTED: presenilin-like protein At2g29900-like [Cicer arietinum] |
| Swissprot | tr|Q9SIK7|PSNB_ARATH | 2.00E-145 | Presenilin-like protein At2g29900 |
| trEMBL | tr|A0A072UQB9|A0A072UQB9_MEDTR | 0 | Presenilin {ECO:0000256|RuleBase:RU361148} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 182815 | 185182 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04505 | PSEN1, PS1 | EC:3.4.23.- | Wnt signaling pathway | map04310 |
| Notch signaling pathway | map04330 | |||
| Neurotrophin signaling pathway | map04722 | |||
| Alzheimer's disease | map05010 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005704.1 | PF01080.12 | Presenilin | 17 | 414 | 3.00E-69 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.489 |
| SRR1783600 | control | 18.901 |
| SRR1783602 | moderate drought stress | 30.621 |
| SRR1811619 | moderate drought stress | 29.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 22.185 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 22.341 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.708 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 15.345 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.964 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 22.184 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.647 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.743 |
| SRR2868004 | Drought Stress(Tissue:root) | 15.730 |
| SRR2967015 | Control (Tissue:root) | 20.029 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 5.156 |
| SRR9715740 | Leave | 7.237 |
| SRR9715741 | Leave | 5.759 |
| SRR9715739 | Root | 20.459 |
| SRR9715742 | Root | 9.925 |
| SRR9715743 | Root | 11.223 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 11.624 |
| SRR8749028 | MeJA induced 9h | 13.840 |
| SRR8749029 | MeJA induced 9h | 7.447 |
| SRR8749030 | Uninduced | 4.959 |
| SRR8749031 | Uninduced | 3.364 |
| SRR8749032 | Uninduced | 4.124 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.472 |
| SRR8400027 | Control-Root | 10.138 |