Gene detail information of Glyur000050s00005710.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G18650.13.00E-34plasmodesmata callose-binding protein 3
NRXP_003527110.12.32E-68PREDICTED: glucan endo-1,3-beta-glucosidase-like protein 3-like isoform X1 [Glycine max]
Swissprottr|Q9FZ86|PDCB3_ARATH2.00E-48PLASMODESMATA CALLOSE-BINDING PROTEIN 3 (Precursor)
trEMBLtr|D7SI17|D7SI17_VITVI2.00E-68Putative uncharacterized protein {ECO:0000313|EMBL:CBI15127.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00050216247230797-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyCBM43


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

Not hits found.


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000050s00005710.1PF07983.8X822907.70E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control277.990
SRR1783600control279.264
SRR1783602moderate drought stress178.887
SRR1811619moderate drought stress179.663

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain194.589
DRR006520Root Summer glycyrrhizin high producing strain197.014
DRR006521Root Winter glycyrrhizin high producing strain0.956
DRR006522Root Winter glycyrrhizin high producing strain0.961
DRR006523Root Summer glycyrrhizin low producing strain77.155
DRR006524Root Summer glycyrrhizin low producing strain76.575
DRR006525Leaf Summer glycyrrhizin high producing strain5.696
DRR006526Leaf Summer glycyrrhizin high producing strain5.755

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)125.185
SRR2868004Drought Stress(Tissue:root)43.913
SRR2967015Control (Tissue:root)59.591

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave16.796
SRR9715740Leave0.644
SRR9715741Leave4.592
SRR9715739Root184.884
SRR9715742Root64.480
SRR9715743Root83.633

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h73.816
SRR8749028MeJA induced 9h13.906
SRR8749029MeJA induced 9h31.782
SRR8749030Uninduced0.536
SRR8749031Uninduced0.000
SRR8749032Uninduced2.226

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root210.398
SRR8400027Control-Root215.796

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved