Gene detail information of Glyur000050s00005721.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G29360.20UDP-glucose 6-dehydrogenase family protein
NRXP_007155252.10hypothetical protein PHAVU_003G186000g [Phaseolus vulgaris]
COGYP_003548756.10nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221]
Swissprottr|Q96558|UGDH1_SOYBN0UDP-glucose 6-dehydrogenase 1
trEMBLtr|V7CED6|V7CED6_PHAVU0UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00050323439326094+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00012UGDH, ugd EC:1.1.1.22 Pentose and glucuronate interconversions map00040
Ascorbate and aldarate metabolismmap00053
Amino sugar and nucleotide sugar metabolismmap00520


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003979  UDP-glucose 6-dehydrogenase activity

GO:0016616  oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor

GO:0051287  NAD binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000050s00005721.1PF03721.9UDPG_MGDP_dh_N232057.00E-61
Glyur000050s00005721.1PF00984.14UDPG_MGDP_dh2293265.60E-30
Glyur000050s00005721.1PF03720.10UDPG_MGDP_dh_C3484729.00E-33


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control9.048
SRR1783600control9.175
SRR1783602moderate drought stress19.798
SRR1811619moderate drought stress19.862

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain16.697
DRR006520Root Summer glycyrrhizin high producing strain16.455
DRR006521Root Winter glycyrrhizin high producing strain44.021
DRR006522Root Winter glycyrrhizin high producing strain42.742
DRR006523Root Summer glycyrrhizin low producing strain37.632
DRR006524Root Summer glycyrrhizin low producing strain37.668
DRR006525Leaf Summer glycyrrhizin high producing strain23.785
DRR006526Leaf Summer glycyrrhizin high producing strain23.941

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.824
SRR2868004Drought Stress(Tissue:root)16.037
SRR2967015Control (Tissue:root)28.981

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.400
SRR9715740Leave15.087
SRR9715741Leave25.547
SRR9715739Root8.192
SRR9715742Root17.425
SRR9715743Root17.456

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h29.408
SRR8749028MeJA induced 9h56.625
SRR8749029MeJA induced 9h53.740
SRR8749030Uninduced99.139
SRR8749031Uninduced102.731
SRR8749032Uninduced111.031

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root22.879
SRR8400027Control-Root19.700