Gene detail information of Glyur000050s00005721.1 |
Functional Annotation
Database | Orthologs | E value | Annotation |
---|---|---|---|
TAIR | AT3G29360.2 | 0 | UDP-glucose 6-dehydrogenase family protein |
NR | XP_007155252.1 | 0 | hypothetical protein PHAVU_003G186000g [Phaseolus vulgaris] |
COG | YP_003548756.1 | 0 | nucleotide sugar dehydrogenase [Coraliomargarita akajimensis DSM 45221] |
Swissprot | tr|Q96558|UGDH1_SOYBN | 0 | UDP-glucose 6-dehydrogenase 1 |
trEMBL | tr|V7CED6|V7CED6_PHAVU | 0 | UDP-glucose 6-dehydrogenase {ECO:0000256|PIRNR:PIRNR000124} |
Sequence
Transcript Sequence |
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Protein Sequence |
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Location information(JBrowse)
Scaffold | Start | End | Strand |
---|---|---|---|
Scaffold00050 | 323439 | 326094 | + |
Gene family
Gene family | subfamily |
---|---|
-- | -- |
KEGG pathway
KO | Enzyme | Enzyme ID | pathway | mapID |
---|---|---|---|---|
K00012 | UGDH, ugd | EC:1.1.1.22 | Pentose and glucuronate interconversions | map00040 |
Ascorbate and aldarate metabolism | map00053 | |||
Amino sugar and nucleotide sugar metabolism | map00520 |
Gene Ontology
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Pfam domain
Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
---|---|---|---|---|---|
Glyur000050s00005721.1 | PF03721.9 | UDPG_MGDP_dh_N | 23 | 205 | 7.00E-61 |
Glyur000050s00005721.1 | PF00984.14 | UDPG_MGDP_dh | 229 | 326 | 5.60E-30 |
Glyur000050s00005721.1 | PF03720.10 | UDPG_MGDP_dh_C | 348 | 472 | 9.00E-33 |
Expression pattern
SRA Experiment | Description | TPM |
---|---|---|
SRR1783599 | control | 9.048 |
SRR1783600 | control | 9.175 |
SRR1783602 | moderate drought stress | 19.798 |
SRR1811619 | moderate drought stress | 19.862 |
SRA Experiment | Description | TPM |
---|---|---|
DRR006519 | Root Summer glycyrrhizin high producing strain | 16.697 |
DRR006520 | Root Summer glycyrrhizin high producing strain | 16.455 |
DRR006521 | Root Winter glycyrrhizin high producing strain | 44.021 |
DRR006522 | Root Winter glycyrrhizin high producing strain | 42.742 |
DRR006523 | Root Summer glycyrrhizin low producing strain | 37.632 |
DRR006524 | Root Summer glycyrrhizin low producing strain | 37.668 |
DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.785 |
DRR006526 | Leaf Summer glycyrrhizin high producing strain | 23.941 |
SRA Experiment | Description | TPM |
---|---|---|
SRR2867873 | Salt Stress(Tissue:root) | 9.824 |
SRR2868004 | Drought Stress(Tissue:root) | 16.037 |
SRR2967015 | Control (Tissue:root) | 28.981 |
SRA Experiment | Description | TPM |
---|---|---|
SRR9715738 | Leave | 15.400 |
SRR9715740 | Leave | 15.087 |
SRR9715741 | Leave | 25.547 |
SRR9715739 | Root | 8.192 |
SRR9715742 | Root | 17.425 |
SRR9715743 | Root | 17.456 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8749027 | MeJA induced 9h | 29.408 |
SRR8749028 | MeJA induced 9h | 56.625 |
SRR8749029 | MeJA induced 9h | 53.740 |
SRR8749030 | Uninduced | 99.139 |
SRR8749031 | Uninduced | 102.731 |
SRR8749032 | Uninduced | 111.031 |
SRA Experiment | Description | TPM |
---|---|---|
SRR8400026 | NaCl treatment-Root | 22.879 |
SRR8400027 | Control-Root | 19.700 |