Gene detail information of Glyur000050s00005732.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G25400.1 | 3.00E-31 | |
| NR | NP_001235962.1 | 3.02E-70 | uncharacterized protein LOC100500294 [Glycine max] |
| COG | NP_899963.1 | 3.00E-29 | hypothetical protein CV_0293 [Chromobacterium violaceum ATCC 12472] |
| trEMBL | tr|K7KMH2|K7KMH2_SOYBN | 3.00E-71 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA05G00750.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00050 | 412420 | 412965 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K16904 | DCTPP1 | EC:3.6.1.12 | Pyrimidine metabolism | map00240 |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000050s00005732.1 | PF03819.12 | MazG | 36 | 114 | 1.30E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.561 |
| SRR1783600 | control | 3.562 |
| SRR1783602 | moderate drought stress | 22.544 |
| SRR1811619 | moderate drought stress | 20.841 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.798 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 2.825 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.707 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 10.650 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.747 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.571 |
| SRR2868004 | Drought Stress(Tissue:root) | 53.578 |
| SRR2967015 | Control (Tissue:root) | 54.471 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 3.327 |
| SRR9715740 | Leave | 0.159 |
| SRR9715741 | Leave | 8.558 |
| SRR9715739 | Root | 1.975 |
| SRR9715742 | Root | 7.735 |
| SRR9715743 | Root | 6.701 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.203 |
| SRR8749028 | MeJA induced 9h | 0.167 |
| SRR8749029 | MeJA induced 9h | 0.176 |
| SRR8749030 | Uninduced | 1.193 |
| SRR8749031 | Uninduced | 0.534 |
| SRR8749032 | Uninduced | 2.091 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 116.832 |
| SRR8400027 | Control-Root | 22.859 |