Gene detail information of Glyur000051s00003398.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16680.1 | 7.00E-109 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_004511407.1 | 0 | PREDICTED: serine-rich adhesin for platelets-like isoform X4 [Cicer arietinum] |
| Swissprot | tr|Q9SGH2|MBD9_ARATH | 4.00E-06 | Methyl-CpG-binding domain-containing protein 9 |
| trEMBL | tr|I1LFW6|I1LFW6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G01070.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 76063 | 84481 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 17.851 |
| SRR1783600 | control | 18.054 |
| SRR1783602 | moderate drought stress | 32.782 |
| SRR1811619 | moderate drought stress | 32.573 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 19.570 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 19.291 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.933 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.603 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 19.336 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 18.984 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 11.681 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 11.612 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 21.023 |
| SRR2868004 | Drought Stress(Tissue:root) | 24.877 |
| SRR2967015 | Control (Tissue:root) | 26.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.846 |
| SRR9715740 | Leave | 17.963 |
| SRR9715741 | Leave | 23.493 |
| SRR9715739 | Root | 3.511 |
| SRR9715742 | Root | 17.052 |
| SRR9715743 | Root | 15.509 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.393 |
| SRR8749028 | MeJA induced 9h | 27.387 |
| SRR8749029 | MeJA induced 9h | 21.566 |
| SRR8749030 | Uninduced | 19.647 |
| SRR8749031 | Uninduced | 23.389 |
| SRR8749032 | Uninduced | 20.930 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 25.764 |
| SRR8400027 | Control-Root | 25.730 |