Gene detail information of Glyur000051s00003407.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G11755.1 | 3.00E-52 | Undecaprenyl pyrophosphate synthetase family protein |
| NR | XP_004511413.1 | 3.62E-126 | PREDICTED: nogo-B receptor-like [Cicer arietinum] |
| trEMBL | tr|G7K548|G7K548_MEDTR | 4.00E-122 | Undecaprenyl pyrophosphate synthetase family protein {ECO:0000313|EMBL:AES93767.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 108884 | 113620 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K11778 | DHDDS, RER2, SRT1 | EC:2.5.1.87 | Terpenoid backbone biosynthesis | map00900 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.505 |
| SRR1783600 | control | 1.534 |
| SRR1783602 | moderate drought stress | 1.742 |
| SRR1811619 | moderate drought stress | 1.723 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.377 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.286 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.707 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.354 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.696 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.839 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.705 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.755 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 9.103 |
| SRR2868004 | Drought Stress(Tissue:root) | 9.047 |
| SRR2967015 | Control (Tissue:root) | 10.273 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.948 |
| SRR9715740 | Leave | 6.971 |
| SRR9715741 | Leave | 5.354 |
| SRR9715739 | Root | 1.293 |
| SRR9715742 | Root | 2.998 |
| SRR9715743 | Root | 3.995 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.992 |
| SRR8749028 | MeJA induced 9h | 3.860 |
| SRR8749029 | MeJA induced 9h | 3.313 |
| SRR8749030 | Uninduced | 4.641 |
| SRR8749031 | Uninduced | 2.638 |
| SRR8749032 | Uninduced | 1.918 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.008 |
| SRR8400027 | Control-Root | 9.225 |