Gene detail information of Glyur000051s00003416.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G03050.10cellulose synthase-like D3
NRXP_003517548.10PREDICTED: cellulose synthase-like protein D2-like isoform X1 [Glycine max]
COGNP_487797.18.00E-20cellulose synthase catalytic subunit [Nostoc sp. PCC 7120]
Swissprottr|Q9M9M4|CSLD3_ARATH0Cellulose synthase-like protein D3
trEMBLtr|K7K5F4|K7K5F4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G44281.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051176293181758+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGT2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0030244  cellulose biosynthetic process


cellular_component

GO:0016020  membrane


molecular_function

GO:0016760  cellulose synthase (UDP-forming) activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003416.1PF14570.1zf-RING_41291789.20E-17
Glyur000051s00003416.1PF03552.9Cellulose_synt37311330


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.777
SRR1783600control24.634
SRR1783602moderate drought stress11.519
SRR1811619moderate drought stress11.444

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.555
DRR006520Root Summer glycyrrhizin high producing strain45.725
DRR006521Root Winter glycyrrhizin high producing strain3.151
DRR006522Root Winter glycyrrhizin high producing strain3.035
DRR006523Root Summer glycyrrhizin low producing strain90.890
DRR006524Root Summer glycyrrhizin low producing strain90.767
DRR006525Leaf Summer glycyrrhizin high producing strain6.945
DRR006526Leaf Summer glycyrrhizin high producing strain6.951

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)42.342
SRR2868004Drought Stress(Tissue:root)42.469
SRR2967015Control (Tissue:root)44.992

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave43.787
SRR9715740Leave26.791
SRR9715741Leave34.133
SRR9715739Root107.533
SRR9715742Root220.833
SRR9715743Root195.536

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h128.347
SRR8749028MeJA induced 9h183.444
SRR8749029MeJA induced 9h112.380
SRR8749030Uninduced153.036
SRR8749031Uninduced67.815
SRR8749032Uninduced81.028

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.980
SRR8400027Control-Root48.540

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved