Gene detail information of Glyur000051s00003417.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G65060.104-coumarate:CoA ligase 3
NRNP_001237270.104-coumarate:CoA ligase isoenzyme 3 [Glycine max]
COGYP_003291469.12.00E-126AMP-dependent synthetase and ligase [Rhodothermus marinus DSM 4252]
Swissprottr|P31687|4CL2_SOYBN04-coumarate--CoA ligase 2
trEMBLtr|Q8S5C2|Q8S5C2_SOYBN04-coumarate:CoA ligase isoenzyme 3 {ECO:0000313|EMBL:AAC97599.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051184457190074+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K019044CL EC:6.2.1.12 Phenylalanine metabolism map00360
Ubiquinone and other terpenoid-quinone biosynthesismap00130
Phenylpropanoid biosynthesismap00940


Gene Ontology

biological_process

GO:0008152  metabolic process


molecular_function

GO:0003824  catalytic activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003417.1PF00501.23AMP-binding684875.60E-101
Glyur000051s00003417.1PF13193.1AMP-binding_C4965711.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control27.861
SRR1783600control27.596
SRR1783602moderate drought stress23.374
SRR1811619moderate drought stress22.780

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain8.008
DRR006520Root Summer glycyrrhizin high producing strain7.660
DRR006521Root Winter glycyrrhizin high producing strain16.588
DRR006522Root Winter glycyrrhizin high producing strain15.659
DRR006523Root Summer glycyrrhizin low producing strain11.950
DRR006524Root Summer glycyrrhizin low producing strain12.205
DRR006525Leaf Summer glycyrrhizin high producing strain32.661
DRR006526Leaf Summer glycyrrhizin high producing strain32.685

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)125.461
SRR2868004Drought Stress(Tissue:root)206.696
SRR2967015Control (Tissue:root)135.792

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave93.999
SRR9715740Leave34.068
SRR9715741Leave93.807
SRR9715739Root58.780
SRR9715742Root101.812
SRR9715743Root84.273

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h16.908
SRR8749028MeJA induced 9h23.311
SRR8749029MeJA induced 9h20.434
SRR8749030Uninduced250.061
SRR8749031Uninduced264.656
SRR8749032Uninduced132.003

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root77.185
SRR8400027Control-Root75.697

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved