Gene detail information of Glyur000051s00003425.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39160.12.00E-41Homeodomain-like superfamily protein
NRKHN35137.10Transcription factor TFIIIB component B'' [Glycine soja]
trEMBLtr|K7K5C7|K7K5C7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43821.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051217966224175+


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006359  regulation of transcription from RNA polymerase III promoter


cellular_component

GO:0000126  transcription factor TFIIIB complex


molecular_function

GO:0001026  TFIIIB-type transcription factor activity

GO:0003677  DNA binding

GO:0003682  chromatin binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003425.1PF00249.26Myb_DNA-binding8338763.90E-09


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.453
SRR1783600control7.518
SRR1783602moderate drought stress10.533
SRR1811619moderate drought stress10.213

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.120
DRR006520Root Summer glycyrrhizin high producing strain9.811
DRR006521Root Winter glycyrrhizin high producing strain6.921
DRR006522Root Winter glycyrrhizin high producing strain6.580
DRR006523Root Summer glycyrrhizin low producing strain12.238
DRR006524Root Summer glycyrrhizin low producing strain11.920
DRR006525Leaf Summer glycyrrhizin high producing strain6.294
DRR006526Leaf Summer glycyrrhizin high producing strain6.676

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.350
SRR2868004Drought Stress(Tissue:root)15.286
SRR2967015Control (Tissue:root)15.559

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.738
SRR9715740Leave11.648
SRR9715741Leave11.856
SRR9715739Root0.981
SRR9715742Root6.678
SRR9715743Root5.403

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h11.910
SRR8749028MeJA induced 9h11.317
SRR8749029MeJA induced 9h10.312
SRR8749030Uninduced10.980
SRR8749031Uninduced9.708
SRR8749032Uninduced6.465

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.981
SRR8400027Control-Root18.173

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved