Gene detail information of Glyur000051s00003427.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16090.10RING/U-box superfamily protein
NRXP_003610850.10E3 ubiquitin-protein ligase synoviolin [Medicago truncatula]
Swissprottr|Q9LW77|HRD1A_ARATH0ERAD-associated E3 ubiquitin-protein ligase HRD1A {ECO:0000305}
trEMBLtr|G7K6H0|G7K6H0_MEDTR0Ubiquitin-protein ligase synoviolin {ECO:0000313|EMBL:AES93808.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051228567233967+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10601SYVN1, HRD1 EC:2.3.2.27 Protein processing in endoplasmic reticulum map04141
Ubiquitin mediated proteolysismap04120


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003427.1PF13639.1zf-RING_23463851.90E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control38.997
SRR1783600control39.104
SRR1783602moderate drought stress34.019
SRR1811619moderate drought stress33.579

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain45.626
DRR006520Root Summer glycyrrhizin high producing strain44.642
DRR006521Root Winter glycyrrhizin high producing strain43.745
DRR006522Root Winter glycyrrhizin high producing strain42.668
DRR006523Root Summer glycyrrhizin low producing strain35.381
DRR006524Root Summer glycyrrhizin low producing strain35.350
DRR006525Leaf Summer glycyrrhizin high producing strain23.893
DRR006526Leaf Summer glycyrrhizin high producing strain23.576

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)53.795
SRR2868004Drought Stress(Tissue:root)59.994
SRR2967015Control (Tissue:root)63.456

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave30.930
SRR9715740Leave28.181
SRR9715741Leave33.611
SRR9715739Root15.740
SRR9715742Root35.885
SRR9715743Root31.143

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h34.508
SRR8749028MeJA induced 9h47.656
SRR8749029MeJA induced 9h41.068
SRR8749030Uninduced50.314
SRR8749031Uninduced67.138
SRR8749032Uninduced52.344

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root58.044
SRR8400027Control-Root53.375

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved