Gene detail information of Glyur000051s00003428.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.10Chalcone and stilbene synthase family protein
NRACH67480.10chalcone synthase [Glycyrrhiza inflata]
COGYP_004652342.17.00E-40hypothetical protein PUV_15380 [Parachlamydia acanthamoebae UV-7]
Swissprottr|P51083|CHS1_TRISU0Chalcone synthase 1
trEMBLtr|C4MJ52|C4MJ52_9FABA0Chalcone synthase {ECO:0000313|EMBL:ACH67480.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051238049247390+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0006633  fatty acid biosynthetic process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0004315  3-oxoacyl-[acyl-carrier-protein] synthase activity

GO:0016746  transferase activity, transferring acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003428.1PF00195.14Chal_sti_synt_N32149.10E-113
Glyur000051s00003428.1PF02797.10Chal_sti_synt_C2243733.20E-77
Glyur000051s00003428.1PF08545.5ACP_syn_III3904561.20E-06
Glyur000051s00003428.1PF02797.10Chal_sti_synt_C4676161.60E-77


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control79.968
SRR1783600control86.600
SRR1783602moderate drought stress128.320
SRR1811619moderate drought stress132.368

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.058
DRR006520Root Summer glycyrrhizin high producing strain0.058
DRR006521Root Winter glycyrrhizin high producing strain0.209
DRR006522Root Winter glycyrrhizin high producing strain0.327
DRR006523Root Summer glycyrrhizin low producing strain0.562
DRR006524Root Summer glycyrrhizin low producing strain0.671
DRR006525Leaf Summer glycyrrhizin high producing strain136.824
DRR006526Leaf Summer glycyrrhizin high producing strain137.630

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)428.319
SRR2868004Drought Stress(Tissue:root)838.626
SRR2967015Control (Tissue:root)584.380

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave292.901
SRR9715740Leave72.400
SRR9715741Leave253.764
SRR9715739Root330.050
SRR9715742Root85.676
SRR9715743Root137.169

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h402.772
SRR8749028MeJA induced 9h924.121
SRR8749029MeJA induced 9h303.735
SRR8749030Uninduced3899.559
SRR8749031Uninduced3896.969
SRR8749032Uninduced1680.151

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root329.021
SRR8400027Control-Root214.877

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved