Gene detail information of Glyur000051s00003431.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G13930.15.00E-168Chalcone and stilbene synthase family protein
NRAFD36435.10chalcone synthase 1 [Astragalus membranaceus]
COGYP_680369.15.00E-41naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprottr|P51083|CHS1_TRISU0Chalcone synthase 1
trEMBLtr|H9BQA1|H9BQA1_ASTME0Chalcone synthase 1 {ECO:0000313|EMBL:AFD36435.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051260503262307+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00660CHS EC:2.3.1.74 Flavonoid biosynthesis map00941
Circadian rhythm - plantmap04712


Gene Ontology

biological_process

GO:0008152  metabolic process

GO:0009058  biosynthetic process


molecular_function

GO:0003824  catalytic activity

GO:0016746  transferase activity, transferring acyl groups

GO:0016747  transferase activity, transferring acyl groups other than amino-acyl groups


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003431.1PF00195.14Chal_sti_synt_N32291.70E-118
Glyur000051s00003431.1PF02797.10Chal_sti_synt_C2393881.30E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control0.097
SRR1783600control0.082
SRR1783602moderate drought stress0.252
SRR1811619moderate drought stress0.187

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.000
DRR006521Root Winter glycyrrhizin high producing strain0.000
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.071
DRR006524Root Summer glycyrrhizin low producing strain0.071
DRR006525Leaf Summer glycyrrhizin high producing strain18.272
DRR006526Leaf Summer glycyrrhizin high producing strain17.598

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)0.046
SRR2868004Drought Stress(Tissue:root)0.297
SRR2967015Control (Tissue:root)0.120

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave9.610
SRR9715740Leave10.989
SRR9715741Leave3.852
SRR9715739Root0.114
SRR9715742Root0.080
SRR9715743Root0.116

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.046
SRR8749028MeJA induced 9h0.043
SRR8749029MeJA induced 9h0.043
SRR8749030Uninduced0.737
SRR8749031Uninduced0.301
SRR8749032Uninduced1.477

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.215
SRR8400027Control-Root1.774

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved