Gene detail

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Gene detail information of Glyur000051s00003434.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G13930.1	2.00E-171	Chalcone and stilbene synthase family protein
NR	AFD36435.1	0	chalcone synthase 1 [Astragalus membranaceus]
COG	YP_680369.1	1.00E-46	naringenin-chalcone synthase [Cytophaga hutchinsonii ATCC 33406]
Swissprot	tr\|O23884\|CHS5_PEA	0	Chalcone synthase 5
trEMBL	tr\|H9BQA1\|H9BQA1_ASTME	0	Chalcone synthase 1 {ECO:0000313\|EMBL:AFD36435.1}

Sequence

Transcript Sequence

>Glyur000051s00003434.1
ATGTTGAATGTAACTGAAATTTGCAAGGCTCAAAGGGCAGAAGGCCCTGCAATCATCTTGGCCATTGGTACTGCAAATCCACCAAATTGCTATCAACAAAGTAATTATCCTGATTACTATTTTAGAATCACAAATAGCGAACACAAAACTGAACTGAAAGAGAAATTCCAGCGGATGTGTGATAAATCCAAGATCAATAAGCGATACCTGTACTTAACTGAAGATGACTTGAANAGGAATCCTAATATTGCCACTTTTATGGAACCTTCTCTGGATGCTAGGCAGGACATGCTCGTTGCAGAAGTGCCTAAATTAGGGAAGGAAGCTGCAATCAATGCCATAAAAGAGTGGGGGCAGCCAAAATCAAAGATTACCCACCTAATCTTTTGCACTTCAAGTTGCATAGACATGCCNGGTGCTGATTATCAACTTACTAAACTCTTATGTCTTCGCCCAGACGTGAGAAGGTATATGATATACCAGCAAGGGTGTTTTGCAGGTGGCACAACGCTTCGTCTGGCCAAAGACTTGGCTGAAAACAATAAAGGTGCTCGTGTGCTAGTTGTTTGTTCTGAGATCGTCGCAGTCCTATTTCGTGGCCCCAGTGAAACTCACCTGGACAGCCTTTTGGGGCAAGCATTGTTTGGAGACGGAGCATCAGCAGTTATTGTTGGTTCTGATCCAATACTAGAAATTGAGAAGCCTTTGTTTGAGCTAGTATGGGCTGCACAAACACTTATTCCAAACAGTGAAGGAGCTATTAAACTTCACATTCGTGAAGCTGGGTTAACATTTCATCTCGAAAGAGATGTACCTAAGACTATCTCAAATAACATTGATGAAACACTCATCAAGGCTTTGCAACCATTAGGTATATCTGACTACAACTCAATCTTTTGGGTTGTACACCCAGGTGGCCCTGCCATTCTAGATCAAATTGAGCAAAAGTTTGGCCTGGAACCTGAAAAAATGAGGGCTAGTAGAGAAGTGCTCAAAGAATATGGTAATATGACAAGTGCANGTGTGTTTTTCATCTTGGACGAGATGAGAAGAAAATCAGCTCAAGATGGACATAGGACCACAGGCGAAGGACTTGAATGGGGCGTGTTGTTCGGTTTTGGACCTGGACTTACCATTGAAACGCTTGTCCTGCATAGTGTGGCCATATGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00051	278216	280385	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00660	CHS	EC:2.3.1.74	Flavonoid biosynthesis	map00941
K00660	CHS	EC:2.3.1.74	Circadian rhythm - plant	map04712

Gene Ontology

biological_process

GO:0008152 metabolic process

GO:0009058 biosynthetic process

molecular_function GO:0003824 catalytic activity GO:0016746 transferase activity, transferring acyl groups GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000051s00003434.1	PF00195.14	Chal_sti_synt_N	4	228	1.40E-119
Glyur000051s00003434.1	PF02797.10	Chal_sti_synt_C	238	387	5.00E-74

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.000
SRR1783600	control	0.000
SRR1783602	moderate drought stress	0.000
SRR1811619	moderate drought stress	0.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.289
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.270

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.000
SRR2868004	Drought Stress(Tissue:root)	0.000
SRR2967015	Control (Tissue:root)	0.066

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	6.130
SRR9715740	Leave	0.329
SRR9715741	Leave	0.874
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.188
SRR8749032	Uninduced	0.049

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.000
SRR8400027	Control-Root	0.074