Gene detail information of Glyur000051s00003441.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G43190.32.00E-55ribonuclease P family protein
NRXP_003537892.10PREDICTED: ribonuclease P protein subunit p29-like [Glycine max]
trEMBLtr|I1LG21|I1LG21_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G01420.3}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051317867324074-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03538POP4, RPP29 EC:3.1.26.5 RNA transport map03013
Ribosome biogenesis in eukaryotesmap03008


Gene Ontology

biological_process

GO:0006364  rRNA processing

GO:0006379  mRNA cleavage

GO:0008033  tRNA processing


cellular_component

GO:0000172  ribonuclease MRP complex

GO:0030677  ribonuclease P complex


molecular_function

GO:0003723  RNA binding

GO:0004540  ribonuclease activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003441.1PF01868.11UPF00862212966.80E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.520
SRR1783600control2.245
SRR1783602moderate drought stress3.210
SRR1811619moderate drought stress3.056

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.016
DRR006520Root Summer glycyrrhizin high producing strain6.229
DRR006521Root Winter glycyrrhizin high producing strain4.649
DRR006522Root Winter glycyrrhizin high producing strain4.256
DRR006523Root Summer glycyrrhizin low producing strain4.863
DRR006524Root Summer glycyrrhizin low producing strain4.689
DRR006525Leaf Summer glycyrrhizin high producing strain2.424
DRR006526Leaf Summer glycyrrhizin high producing strain2.462

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.904
SRR2868004Drought Stress(Tissue:root)4.675
SRR2967015Control (Tissue:root)4.679

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave3.406
SRR9715740Leave4.106
SRR9715741Leave3.630
SRR9715739Root1.678
SRR9715742Root3.211
SRR9715743Root2.643

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h3.998
SRR8749028MeJA induced 9h2.738
SRR8749029MeJA induced 9h2.660
SRR8749030Uninduced1.203
SRR8749031Uninduced0.996
SRR8749032Uninduced0.981

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root6.229
SRR8400027Control-Root6.416

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved