Gene detail information of Glyur000051s00003442.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G20920.10P-loop containing nucleoside triphosphate hydrolases superfamily protein
NRXP_004485495.10PREDICTED: DEAD-box ATP-dependent RNA helicase 42-like isoform X1 [Cicer arietinum]
COGYP_004129364.11.00E-84ATP-dependent RNA helicase [Taylorella equigenitalis MCE9]
Swissprottr|Q8H0U8|RH42_ARATH0DEAD-box ATP-dependent RNA helicase 42
trEMBLtr|V7CJE2|V7CJE2_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW29026.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00051327770333087-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12811DDX46, PRP5 EC:3.6.4.13 Spliceosome map03040


Gene Ontology

molecular_function

GO:0003676  nucleic acid binding

GO:0005524  ATP binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000051s00003442.1PF00270.24DEAD5286992.30E-46
Glyur000051s00003442.1PF00271.26Helicase_C7708451.60E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.132
SRR1783600control22.147
SRR1783602moderate drought stress34.760
SRR1811619moderate drought stress35.100

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain24.259
DRR006520Root Summer glycyrrhizin high producing strain24.274
DRR006521Root Winter glycyrrhizin high producing strain29.624
DRR006522Root Winter glycyrrhizin high producing strain28.848
DRR006523Root Summer glycyrrhizin low producing strain33.657
DRR006524Root Summer glycyrrhizin low producing strain34.070
DRR006525Leaf Summer glycyrrhizin high producing strain19.473
DRR006526Leaf Summer glycyrrhizin high producing strain19.474

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)35.142
SRR2868004Drought Stress(Tissue:root)37.565
SRR2967015Control (Tissue:root)43.368

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave14.793
SRR9715740Leave22.560
SRR9715741Leave17.737
SRR9715739Root2.053
SRR9715742Root15.510
SRR9715743Root13.943

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.571
SRR8749028MeJA induced 9h19.939
SRR8749029MeJA induced 9h15.457
SRR8749030Uninduced19.236
SRR8749031Uninduced14.252
SRR8749032Uninduced13.756

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root33.717
SRR8400027Control-Root31.911

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved