Gene detail information of Glyur000051s00003444.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G33270.1 | 0 | Transducin family protein / WD-40 repeat family protein |
| NR | XP_003517533.1 | 0 | PREDICTED: cell division cycle 20.1, cofactor of APC complex [Glycine max] |
| COG | YP_001275252.1 | 1.00E-29 | WD-40 repeat-containing protein [Roseiflexus sp. RS-1] |
| Swissprot | tr|Q9SZA4|CDC21_ARATH | 0 | Cell division cycle 20.1, cofactor of APC complex |
| trEMBL | tr|I1JAI7|I1JAI7_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G43980.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00051 | 340809 | 342982 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000051s00003444.1 | PF00400.27 | WD40 | 177 | 209 | 0.00019 |
| Glyur000051s00003444.1 | PF00400.27 | WD40 | 216 | 246 | 0.094 |
| Glyur000051s00003444.1 | PF00400.27 | WD40 | 258 | 293 | 1.20E-08 |
| Glyur000051s00003444.1 | PF00400.27 | WD40 | 306 | 344 | 2.10E-07 |
| Glyur000051s00003444.1 | PF00400.27 | WD40 | 395 | 429 | 4.20E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.051 |
| SRR1783600 | control | 4.003 |
| SRR1783602 | moderate drought stress | 7.059 |
| SRR1811619 | moderate drought stress | 6.939 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.711 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.759 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.236 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.235 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.875 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.981 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.541 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.548 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 20.442 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.147 |
| SRR2967015 | Control (Tissue:root) | 13.266 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.246 |
| SRR9715740 | Leave | 0.152 |
| SRR9715741 | Leave | 0.611 |
| SRR9715739 | Root | 1.023 |
| SRR9715742 | Root | 1.202 |
| SRR9715743 | Root | 1.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 44.632 |
| SRR8749028 | MeJA induced 9h | 21.196 |
| SRR8749029 | MeJA induced 9h | 36.923 |
| SRR8749030 | Uninduced | 2.380 |
| SRR8749031 | Uninduced | 1.457 |
| SRR8749032 | Uninduced | 5.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.435 |
| SRR8400027 | Control-Root | 12.702 |