Gene detail information of Glyur000052s00005752.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G54150.13.00E-85E3 Ubiquitin ligase family protein
NRXP_007135436.10hypothetical protein PHAVU_010G129300g [Phaseolus vulgaris]
Swissprottr|Q84ME1|LUL3_ARATH8.00E-07Probable E3 ubiquitin-protein ligase LUL3
trEMBLtr|V7AQ28|V7AQ28_PHAVU0Uncharacterized protein {ECO:0000313|EMBL:ESW07430.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000522761432329+


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0007005  mitochondrion organization


molecular_function

GO:0004842  ubiquitin-protein transferase activity

GO:0005515  protein binding

GO:0008270  zinc ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000052s00005752.1PF12483.3GIDE1502771.70E-31
Glyur000052s00005752.1PF13920.1zf-C3HC4_33283754.00E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control14.265
SRR1783600control14.565
SRR1783602moderate drought stress12.358
SRR1811619moderate drought stress12.233

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain19.727
DRR006520Root Summer glycyrrhizin high producing strain19.439
DRR006521Root Winter glycyrrhizin high producing strain18.197
DRR006522Root Winter glycyrrhizin high producing strain17.466
DRR006523Root Summer glycyrrhizin low producing strain20.841
DRR006524Root Summer glycyrrhizin low producing strain20.983
DRR006525Leaf Summer glycyrrhizin high producing strain9.498
DRR006526Leaf Summer glycyrrhizin high producing strain9.759

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.664
SRR2868004Drought Stress(Tissue:root)21.245
SRR2967015Control (Tissue:root)20.443

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.820
SRR9715740Leave15.525
SRR9715741Leave17.200
SRR9715739Root11.591
SRR9715742Root13.137
SRR9715743Root13.404

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h9.825
SRR8749028MeJA induced 9h6.978
SRR8749029MeJA induced 9h9.340
SRR8749030Uninduced8.217
SRR8749031Uninduced15.084
SRR8749032Uninduced9.656

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.305
SRR8400027Control-Root16.883

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved