Gene detail information of Glyur000052s00005754.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G13840.1 | 9.00E-120 | GRAS family transcription factor |
| NR | XP_003627294.1 | 0 | Nodulation signaling pathway 1 protein [Medicago truncatula] |
| Swissprot | tr|Q4VYC8|NSP1_MEDTR | 0 | Nodulation-signaling pathway 1 protein |
| trEMBL | tr|G7L7I4|G7L7I4_MEDTR | 0 | GRAS family transcription factor {ECO:0000313|EMBL:AET01770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 32725 | 34446 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | GRAS |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene OntologyNot hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005754.1 | PF03514.9 | GRAS | 189 | 569 | 1.70E-78 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.379 |
| SRR1783600 | control | 0.386 |
| SRR1783602 | moderate drought stress | 0.245 |
| SRR1811619 | moderate drought stress | 0.264 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.233 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.233 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.130 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.277 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.367 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.241 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.291 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 17.170 |
| SRR2868004 | Drought Stress(Tissue:root) | 21.454 |
| SRR2967015 | Control (Tissue:root) | 19.090 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 2.074 |
| SRR9715740 | Leave | 0.615 |
| SRR9715741 | Leave | 4.377 |
| SRR9715739 | Root | 1.223 |
| SRR9715742 | Root | 2.088 |
| SRR9715743 | Root | 1.978 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 17.270 |
| SRR8749028 | MeJA induced 9h | 17.873 |
| SRR8749029 | MeJA induced 9h | 11.767 |
| SRR8749030 | Uninduced | 27.508 |
| SRR8749031 | Uninduced | 9.869 |
| SRR8749032 | Uninduced | 12.842 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 2.336 |
| SRR8400027 | Control-Root | 1.745 |