Gene detail

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Gene detail information of Glyur000052s00005763.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G13960.1	2.00E-44	growth-regulating factor 5
NR	XP_007135443.1	0	hypothetical protein PHAVU_010G130000g [Phaseolus vulgaris]
Swissprot	tr\|Q8L8A6\|GRF5_ARATH	9.00E-66	Growth-regulating factor 5
trEMBL	tr\|V7AP53\|V7AP53_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW07437.1}

Sequence

Transcript Sequence

>Glyur000052s00005763.1
ATGATGAGTGAAAGTGCAAGAAATAGGTCCCCTTTCACACCAACTCAGTGGCAAGAGCTTGAACAACAAGCTCTTGTTTTTAAGTACATGGTCACGGGAACACCTATCCCACCAGATCTCATNTACTCTATTAAAAGAAGTCTAGACTCTTCAATCTCTTCAAGNCTCTTCCCACATCATCCCATTGGGTGGGGATGTTTTGAAATGGGATTTGGCAGAAAAGTAGACCCAGAGCCAGGGAGGTGCAGAAGAACAGATGGCAAGAAATGGAGATGCTCAAAGGAAGCATATCCAGACTCCAAGTACTGCGAGAGACACATGCACAGAGGCAGGAACCGTTCAAGAAAGCCTGTGGAAGTTTCTTCATCATCATCAGCAACAACATTAAGCACCGCCACAAACAACACCTCCCAATTAACAAACTCATCATCAATATCTTCTTATAACAACAGAAGCCTCTCCTTGAGCAGCAGCAGCAGCAACAACCCCANTACCATAACTTCACCCTCTTCTTTCCCTTTCTCTCCATTGACTTCATCTATTCCCTGTCATGAGTCCCAGCCCTTTTCCCAATCCTACCAAAACTCTTCCCTAAACCCCTTCTTTTACCCCCAATCAACAACCTCTTCTAGACCCCATGATTCTGATTTCCCACCTCAAGATGCCACTACCCATCACCTATTTATGGACTCTGGGTCTTATTCTCAGGANGAAAAGGATTATAGGCATGTTCATGGAATAAGGGAGGGTGTGGATGAGAGAGCTTTCTTCCCAGAAGCTTCTTCAGGGTCTTCTACTAGGAGCTACCCTGCTGACTCATATCAACAACTATCAATGAACTCCTATAAGTCCTATTCAAGCTCCCAATTTCAGAACATCAATGATAACAACCCAAGACAGCAGCAACAACAACAACACTGCTTTGTTTTGGGTACTGACTTCAAATCAACAAGACCAAGCAAAGAGAAAGAAAGTGATGAGACAACCCAGAGACCCCTCCATCACTTCTTTGGGGAGTGGCCACCAAAGAACACAGATTCCTGGCTAGATCTTGCTTCCAACTCCAGAATCCCAACTGGATTTTTGGATTTTGCTTTGTTTCATTGCCCTGAGCAATCAAAGTGGGGTAACTATAGGTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00052	79204	81342	+

Gene family

Gene family	subfamily
Transcription Factors Family	GRF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

cellular_component GO:0005634 nucleus molecular_function GO:0005524 ATP binding GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides "

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000052s00005763.1	PF08880.6	QLQ	10	45	1.50E-14
Glyur000052s00005763.1	PF08879.5	WRC	76	120	1.50E-22

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.188
SRR1783600	control	0.096
SRR1783602	moderate drought stress	0.317
SRR1811619	moderate drought stress	0.341

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.000
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.090
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.896
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.640
SRR2868004	Drought Stress(Tissue:root)	0.419
SRR2967015	Control (Tissue:root)	1.879

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.535
SRR9715740	Leave	0.448
SRR9715741	Leave	0.701
SRR9715739	Root	0.000
SRR9715742	Root	0.908
SRR9715743	Root	0.409

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.000
SRR8749028	MeJA induced 9h	0.000
SRR8749029	MeJA induced 9h	0.000
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.014

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.345
SRR8400027	Control-Root	1.569