Gene detail information of Glyur000052s00005783.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17905.1 | 3.00E-15 | RING/U-box superfamily protein |
| NR | XP_004510497.1 | 7.86E-77 | PREDICTED: RING-H2 finger protein ATL52-like [Cicer arietinum] |
| Swissprot | tr|P0C041|ATL53_ARATH | 2.00E-17 | Putative RING-H2 finger protein ATL53 |
| trEMBL | tr|A0A072TMP2|A0A072TMP2_MEDTR | 4.00E-60 | Zinc finger, C3HC4 type (RING finger) protein {ECO:0000313|EMBL:KEH18461.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00052 | 215647 | 222499 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000052s00005783.1 | PF13639.1 | zf-RING_2 | 78 | 121 | 1.10E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.077 |
| SRR1811619 | moderate drought stress | 0.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.439 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.219 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.227 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.221 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.459 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.185 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.194 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.415 |
| SRR2967015 | Control (Tissue:root) | 0.394 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.005 |
| SRR9715740 | Leave | 0.000 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.272 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.144 |
| SRR8749028 | MeJA induced 9h | 0.273 |
| SRR8749029 | MeJA induced 9h | 0.062 |
| SRR8749030 | Uninduced | 0.087 |
| SRR8749031 | Uninduced | 0.228 |
| SRR8749032 | Uninduced | 0.099 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.123 |
| SRR8400027 | Control-Root | 0.237 |