Gene detail information of Glyur000052s00005798.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G20510.14.00E-87alfin-like 5
NRXP_006598668.10PREDICTED: PHD1 isoform X2 [Glycine max]
Swissprottr|Q5XEM9|ALFL5_ARATH2.00E-126PHD finger protein ALFIN-LIKE 5, N-terminally processed
trEMBLtr|I1MJY1|I1MJY1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G00680.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00052323134327819+


Gene family

Gene familysubfamily
Transcription Factors FamilyAlfin-like


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0042393  histone binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000052s00005798.1PF12165.3DUF3594101461.00E-82
Glyur000052s00005798.1PF00628.24PHD2002498.40E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control24.826
SRR1783600control24.873
SRR1783602moderate drought stress34.385
SRR1811619moderate drought stress34.318

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain29.963
DRR006520Root Summer glycyrrhizin high producing strain30.293
DRR006521Root Winter glycyrrhizin high producing strain18.674
DRR006522Root Winter glycyrrhizin high producing strain17.990
DRR006523Root Summer glycyrrhizin low producing strain39.241
DRR006524Root Summer glycyrrhizin low producing strain39.586
DRR006525Leaf Summer glycyrrhizin high producing strain18.405
DRR006526Leaf Summer glycyrrhizin high producing strain18.389

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)54.580
SRR2868004Drought Stress(Tissue:root)49.529
SRR2967015Control (Tissue:root)55.031

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave29.470
SRR9715740Leave33.484
SRR9715741Leave34.133
SRR9715739Root42.777
SRR9715742Root34.521
SRR9715743Root38.666

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h72.653
SRR8749028MeJA induced 9h36.298
SRR8749029MeJA induced 9h55.092
SRR8749030Uninduced26.537
SRR8749031Uninduced11.919
SRR8749032Uninduced19.063

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root39.992
SRR8400027Control-Root39.950

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved