Gene detail information of Glyur000052s00005814.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G55020.10lipoxygenase 1
NRAAB71759.10lipoxygenase [Pisum sativum]
Swissprottr|P24095|LOXX_SOYBN0Seed linoleate 9S-lipoxygenase
trEMBLtr|O24470|O24470_PEA0Lipoxygenase {ECO:0000256|RuleBase:RU003975}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00052449754463032+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15718LOX1_5 EC:1.13.11.58 Linoleic acid metabolism map00591


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0005515  protein binding

GO:0016491  oxidoreductase activity

GO:0016702  oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872  metal ion binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000052s00005814.1PF01477.18PLAT741691.00E-16
Glyur000052s00005814.1PF00305.14Lipoxygenase1815627.00E-162
Glyur000052s00005814.1PF00305.14Lipoxygenase5627861.40E-110
Glyur000052s00005814.1PF01477.18PLAT8669561.50E-16
Glyur000052s00005814.1PF00305.14Lipoxygenase96712841.70E-138
Glyur000052s00005814.1PF00305.14Lipoxygenase128413425.80E-23
Glyur000052s00005814.1PF00305.14Lipoxygenase134114563.30E-61
Glyur000052s00005814.1PF00305.14Lipoxygenase145615257.20E-24


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control505.277
SRR1783600control511.109
SRR1783602moderate drought stress417.954
SRR1811619moderate drought stress417.474

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain202.289
DRR006520Root Summer glycyrrhizin high producing strain202.067
DRR006521Root Winter glycyrrhizin high producing strain4.644
DRR006522Root Winter glycyrrhizin high producing strain4.510
DRR006523Root Summer glycyrrhizin low producing strain8.562
DRR006524Root Summer glycyrrhizin low producing strain8.643
DRR006525Leaf Summer glycyrrhizin high producing strain0.854
DRR006526Leaf Summer glycyrrhizin high producing strain0.770

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)525.519
SRR2868004Drought Stress(Tissue:root)264.794
SRR2967015Control (Tissue:root)321.166

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave55.358
SRR9715740Leave2.285
SRR9715741Leave15.427
SRR9715739Root138.538
SRR9715742Root723.636
SRR9715743Root610.920

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.168
SRR8749028MeJA induced 9h3.614
SRR8749029MeJA induced 9h1.062
SRR8749030Uninduced32.832
SRR8749031Uninduced19.139
SRR8749032Uninduced46.285

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root502.942
SRR8400027Control-Root282.220

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved