Gene detail information of Glyur000053s00006427.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G49820.1 | 1.00E-163 | S-methyl-5-thioribose kinase |
| NR | KEH44069.1 | 0 | methylthioribose kinase [Medicago truncatula] |
| COG | YP_007513008.1 | 1.00E-111 | putative S-methyl-5-thioribose kinase [Bradyrhizobium oligotrophicum S58] |
| Swissprot | tr|Q9C6D2|MTK_ARATH | 0 | Methylthioribose kinase |
| trEMBL | tr|A0A072VPX2|A0A072VPX2_MEDTR | 0 | Methylthioribose kinase {ECO:0000313|EMBL:KEH44069.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 80498 | 93044 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K00899 | mtnK | EC:2.7.1.100 | Cysteine and methionine metabolism | map00270 |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006427.1 | PF01636.18 | APH | 37 | 289 | 7.30E-17 |
| Glyur000053s00006427.1 | PF01636.18 | APH | 376 | 584 | 7.20E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.878 |
| SRR1783600 | control | 19.642 |
| SRR1783602 | moderate drought stress | 20.584 |
| SRR1811619 | moderate drought stress | 19.615 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.494 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.105 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.106 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.355 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.217 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 11.353 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 14.994 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 15.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 16.649 |
| SRR2868004 | Drought Stress(Tissue:root) | 17.330 |
| SRR2967015 | Control (Tissue:root) | 12.315 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 12.835 |
| SRR9715740 | Leave | 16.190 |
| SRR9715741 | Leave | 17.796 |
| SRR9715739 | Root | 15.027 |
| SRR9715742 | Root | 23.614 |
| SRR9715743 | Root | 20.977 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.277 |
| SRR8749028 | MeJA induced 9h | 6.014 |
| SRR8749029 | MeJA induced 9h | 3.369 |
| SRR8749030 | Uninduced | 5.524 |
| SRR8749031 | Uninduced | 1.679 |
| SRR8749032 | Uninduced | 0.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.506 |
| SRR8400027 | Control-Root | 21.712 |