Gene detail information of Glyur000053s00006433.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G34260.101,2-alpha-L-fucosidases
NRKEH44060.10alpha-L-fucosidase-like protein [Medicago truncatula]
COGYP_004644487.10alpha-L-fucosidase [Paenibacillus mucilaginosus KNP414]
Swissprottr|Q8L7W8|FUCO2_ARATH0Alpha-L-fucosidase 2 (Precursor)
trEMBLtr|A0A072W198|A0A072W198_MEDTR0Alpha-L-fucosidase-like protein {ECO:0000313|EMBL:KEH44060.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053111738119335+


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH95


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K15923AXY8, FUC95A, afcA EC:3.2.1.51 Other glycan degradation map00511


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0004560  alpha-L-fucosidase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006433.1PF14498.1Glyco_hyd_65N_2663121.40E-62


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.110
SRR1783600control7.254
SRR1783602moderate drought stress4.352
SRR1811619moderate drought stress4.398

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.318
DRR006520Root Summer glycyrrhizin high producing strain5.149
DRR006521Root Winter glycyrrhizin high producing strain7.941
DRR006522Root Winter glycyrrhizin high producing strain7.602
DRR006523Root Summer glycyrrhizin low producing strain3.212
DRR006524Root Summer glycyrrhizin low producing strain3.325
DRR006525Leaf Summer glycyrrhizin high producing strain1.615
DRR006526Leaf Summer glycyrrhizin high producing strain1.586

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.462
SRR2868004Drought Stress(Tissue:root)6.066
SRR2967015Control (Tissue:root)9.220

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.311
SRR9715740Leave0.927
SRR9715741Leave2.699
SRR9715739Root2.220
SRR9715742Root6.630
SRR9715743Root5.663

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.667
SRR8749028MeJA induced 9h11.283
SRR8749029MeJA induced 9h10.030
SRR8749030Uninduced0.966
SRR8749031Uninduced0.916
SRR8749032Uninduced2.513

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root12.407
SRR8400027Control-Root13.219

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved