Gene detail information of Glyur000053s00006438.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G19510.11.00E-85Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
NRXP_004496910.10PREDICTED: pathogenesis-related homeodomain protein-like isoform X1 [Cicer arietinum]
Swissprottr|Q04996|HAT31_ARATH1.00E-126Homeobox protein HAT3.1
trEMBLtr|K7LLH5|K7LLH5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G40641.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053132044139574-


Gene family

Gene familysubfamily
Transcription Factors FamilyHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006438.1PF00628.24PHD7468016.90E-10
Glyur000053s00006438.1PF00046.24Homeobox109711424.60E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.760
SRR1783600control5.750
SRR1783602moderate drought stress7.678
SRR1811619moderate drought stress7.703

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.744
DRR006520Root Summer glycyrrhizin high producing strain6.576
DRR006521Root Winter glycyrrhizin high producing strain14.134
DRR006522Root Winter glycyrrhizin high producing strain13.688
DRR006523Root Summer glycyrrhizin low producing strain8.512
DRR006524Root Summer glycyrrhizin low producing strain8.544
DRR006525Leaf Summer glycyrrhizin high producing strain5.378
DRR006526Leaf Summer glycyrrhizin high producing strain5.295

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)9.258
SRR2868004Drought Stress(Tissue:root)10.228
SRR2967015Control (Tissue:root)10.915

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave7.310
SRR9715740Leave8.742
SRR9715741Leave7.476
SRR9715739Root0.644
SRR9715742Root5.245
SRR9715743Root5.123

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h14.158
SRR8749028MeJA induced 9h11.478
SRR8749029MeJA induced 9h10.999
SRR8749030Uninduced10.978
SRR8749031Uninduced11.183
SRR8749032Uninduced7.794

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.622
SRR8400027Control-Root9.717

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved