Gene detail information of Glyur000053s00006449.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49850.12.00E-26RING/U-box superfamily protein
NRKEH44035.12.19E-68C3HC4-type RING zinc finger protein [Medicago truncatula]
Swissprottr|Q9LM69|ATL80_ARATH1.00E-11RING-H2 finger protein ATL80
trEMBLtr|A0A072W173|A0A072W173_MEDTR8.00E-69C3HC4-type RING zinc finger protein {ECO:0000313|EMBL:KEH44035.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053210877214391-


Gene family

Gene familysubfamily
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006449.1PF13639.1zf-RING_22593013.60E-15


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.361
SRR1783600control7.368
SRR1783602moderate drought stress8.333
SRR1811619moderate drought stress8.305

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain11.599
DRR006520Root Summer glycyrrhizin high producing strain11.488
DRR006521Root Winter glycyrrhizin high producing strain9.065
DRR006522Root Winter glycyrrhizin high producing strain8.729
DRR006523Root Summer glycyrrhizin low producing strain21.915
DRR006524Root Summer glycyrrhizin low producing strain22.012
DRR006525Leaf Summer glycyrrhizin high producing strain6.116
DRR006526Leaf Summer glycyrrhizin high producing strain6.043

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)11.585
SRR2868004Drought Stress(Tissue:root)13.464
SRR2967015Control (Tissue:root)13.807

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.917
SRR9715740Leave30.165
SRR9715741Leave27.048
SRR9715739Root20.331
SRR9715742Root23.254
SRR9715743Root22.362

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h18.061
SRR8749028MeJA induced 9h23.120
SRR8749029MeJA induced 9h16.942
SRR8749030Uninduced12.375
SRR8749031Uninduced7.722
SRR8749032Uninduced8.207

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root10.239
SRR8400027Control-Root21.470

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved