Gene detail information of Glyur000053s00006453.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G15090.1 | 0 | FRS (FAR1 Related Sequences) transcription factor family |
| NR | XP_006589623.1 | 0 | PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like isoform X3 [Glycine max] |
| Swissprot | tr|Q9SWG3|FAR1_ARATH | 0 | Protein FAR-RED IMPAIRED RESPONSE 1 |
| trEMBL | tr|I1LEG3|I1LEG3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G40510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 216627 | 221646 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006453.1 | PF03101.10 | FAR1 | 200 | 286 | 2.50E-25 |
| Glyur000053s00006453.1 | PF10551.4 | MULE | 409 | 477 | 9.60E-19 |
| Glyur000053s00006453.1 | PF04434.12 | SWIM | 644 | 672 | 7.90E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.091 |
| SRR1783600 | control | 3.157 |
| SRR1783602 | moderate drought stress | 3.080 |
| SRR1811619 | moderate drought stress | 3.125 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.625 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.649 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.732 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.198 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.357 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.919 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.865 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.812 |
| SRR2868004 | Drought Stress(Tissue:root) | 8.513 |
| SRR2967015 | Control (Tissue:root) | 8.907 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 7.185 |
| SRR9715740 | Leave | 6.600 |
| SRR9715741 | Leave | 8.958 |
| SRR9715739 | Root | 1.657 |
| SRR9715742 | Root | 7.097 |
| SRR9715743 | Root | 5.476 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.748 |
| SRR8749028 | MeJA induced 9h | 5.049 |
| SRR8749029 | MeJA induced 9h | 2.391 |
| SRR8749030 | Uninduced | 4.189 |
| SRR8749031 | Uninduced | 3.811 |
| SRR8749032 | Uninduced | 1.950 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.940 |
| SRR8400027 | Control-Root | 7.770 |