Gene detail information of Glyur000053s00006468.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67450.12.00E-28zinc-finger protein 1
NRXP_003555988.12.09E-83PREDICTED: zinc finger protein ZAT10-like [Glycine max]
Swissprottr|Q96289|ZAT10_ARATH9.00E-45Zinc finger protein ZAT10
trEMBLtr|I1NG21|I1NG21_SOYBN8.00E-84Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA20G26940.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053298818299651-


Gene family

Gene familysubfamily
Transcription Factors FamilyC2H2


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0046872  metal ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006468.1PF13912.1zf-C2H2_61241491.40E-10
Glyur000053s00006468.1PF13912.1zf-C2H2_61802039.30E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.470
SRR1783600control2.415
SRR1783602moderate drought stress3.169
SRR1811619moderate drought stress2.851

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain188.216
DRR006520Root Summer glycyrrhizin high producing strain192.045
DRR006521Root Winter glycyrrhizin high producing strain85.873
DRR006522Root Winter glycyrrhizin high producing strain85.877
DRR006523Root Summer glycyrrhizin low producing strain430.372
DRR006524Root Summer glycyrrhizin low producing strain432.368
DRR006525Leaf Summer glycyrrhizin high producing strain104.242
DRR006526Leaf Summer glycyrrhizin high producing strain101.083

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.102
SRR2868004Drought Stress(Tissue:root)118.137
SRR2967015Control (Tissue:root)269.494

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave355.936
SRR9715740Leave419.640
SRR9715741Leave374.665
SRR9715739Root568.636
SRR9715742Root348.314
SRR9715743Root407.695

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h433.049
SRR8749028MeJA induced 9h667.776
SRR8749029MeJA induced 9h449.506
SRR8749030Uninduced555.156
SRR8749031Uninduced361.703
SRR8749032Uninduced300.172

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.719
SRR8400027Control-Root40.144

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved