Gene detail information of Glyur000053s00006469.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G49970.16.00E-121CLP protease proteolytic subunit 1
NRXP_003555989.10PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic-like [Glycine max]
COGYP_007142087.15.00E-54ATP-dependent Clp protease proteolytic subunit [Crinalium epipsammum PCC 9333]
Swissprottr|Q9XJ35|CLPR1_ARATH3.00E-163ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic (Precursor)
trEMBLtr|K7N394|K7N394_SOYBN0ATP-dependent Clp protease proteolytic subunit {ECO:0000256|RuleBase:RU003567}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053306988311236+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01358clpP, CLPP EC:3.4.21.92 Cell cycle - Caulobacter map04112
Longevity regulating pathway - wormmap04212


Gene Ontology

biological_process

GO:0006508  proteolysis


molecular_function

GO:0004252  serine-type endopeptidase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006469.1PF00574.18CLP_protease1513315.50E-36


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control55.128
SRR1783600control53.528
SRR1783602moderate drought stress46.236
SRR1811619moderate drought stress45.969

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain72.386
DRR006520Root Summer glycyrrhizin high producing strain71.187
DRR006521Root Winter glycyrrhizin high producing strain162.009
DRR006522Root Winter glycyrrhizin high producing strain158.281
DRR006523Root Summer glycyrrhizin low producing strain80.094
DRR006524Root Summer glycyrrhizin low producing strain79.643
DRR006525Leaf Summer glycyrrhizin high producing strain192.726
DRR006526Leaf Summer glycyrrhizin high producing strain191.573

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)68.308
SRR2868004Drought Stress(Tissue:root)76.196
SRR2967015Control (Tissue:root)72.759

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave200.695
SRR9715740Leave277.263
SRR9715741Leave225.302
SRR9715739Root78.686
SRR9715742Root84.488
SRR9715743Root84.616

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.333
SRR8749028MeJA induced 9h85.128
SRR8749029MeJA induced 9h62.277
SRR8749030Uninduced50.444
SRR8749031Uninduced33.292
SRR8749032Uninduced31.679

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root90.124
SRR8400027Control-Root94.805

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved