Gene detail information of Glyur000053s00006480.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G04640.23.00E-100lipoyltransferase 2
NRXP_004496872.14.67E-159PREDICTED: octanoyltransferase-like [Cicer arietinum]
COGYP_001543233.15.00E-48lipoate-protein ligase B [Herpetosiphon aurantiacus DSM 785]
Swissprottr|Q9SXP7|LIPB_ARATH4.00E-126Octanoyltransferase
trEMBLtr|A0A072VQE6|A0A072VQE6_MEDTR2.00E-155Biotin/lipoate A/B protein ligase family protein {ECO:0000313|EMBL:KEH44017.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053372563374082-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K03801lipB EC:2.3.1.181 Lipoic acid metabolism map00785


Gene Ontology

biological_process

GO:0006464  cellular protein modification process

GO:0009107  lipoate biosynthetic process


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0016415  octanoyltransferase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006480.1PF03099.14BPL_LplA_LipB531683.00E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.652
SRR1783600control3.579
SRR1783602moderate drought stress3.358
SRR1811619moderate drought stress3.326

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain6.051
DRR006520Root Summer glycyrrhizin high producing strain5.723
DRR006521Root Winter glycyrrhizin high producing strain11.996
DRR006522Root Winter glycyrrhizin high producing strain11.753
DRR006523Root Summer glycyrrhizin low producing strain14.535
DRR006524Root Summer glycyrrhizin low producing strain14.621
DRR006525Leaf Summer glycyrrhizin high producing strain7.222
DRR006526Leaf Summer glycyrrhizin high producing strain7.051

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.616
SRR2868004Drought Stress(Tissue:root)6.890
SRR2967015Control (Tissue:root)5.388

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.278
SRR9715740Leave3.838
SRR9715741Leave6.987
SRR9715739Root1.592
SRR9715742Root2.242
SRR9715743Root2.396

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.902
SRR8749028MeJA induced 9h37.741
SRR8749029MeJA induced 9h38.741
SRR8749030Uninduced30.640
SRR8749031Uninduced73.424
SRR8749032Uninduced34.886

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root5.774
SRR8400027Control-Root4.834

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved