Gene detail information of Glyur000053s00006483.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G10200.1 | 3.00E-78 | GATA type zinc finger transcription factor family protein |
| NR | XP_007143127.1 | 2.45E-123 | hypothetical protein PHAVU_007G046100g [Phaseolus vulgaris] |
| Swissprot | tr|Q94JX5|WLIM1_ARATH | 1.00E-98 | LIM domain-containing protein WLIM1 {ECO:0000305} |
| trEMBL | tr|V7BF73|V7BF73_PHAVU | 9.00E-124 | Uncharacterized protein {ECO:0000313|EMBL:ESW15121.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00053 | 380648 | 382427 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | LIM |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000053s00006483.1 | PF00412.17 | LIM | 16 | 70 | 3.10E-12 |
| Glyur000053s00006483.1 | PF00412.17 | LIM | 115 | 170 | 5.30E-14 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.129 |
| SRR1783600 | control | 0.137 |
| SRR1783602 | moderate drought stress | 0.264 |
| SRR1811619 | moderate drought stress | 0.233 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.602 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.411 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.543 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.371 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.528 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.463 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.087 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.124 |
| SRR2967015 | Control (Tissue:root) | 0.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.563 |
| SRR9715740 | Leave | 1.113 |
| SRR9715741 | Leave | 0.000 |
| SRR9715739 | Root | 0.164 |
| SRR9715742 | Root | 0.210 |
| SRR9715743 | Root | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 3.439 |
| SRR8749028 | MeJA induced 9h | 2.476 |
| SRR8749029 | MeJA induced 9h | 3.358 |
| SRR8749030 | Uninduced | 1.476 |
| SRR8749031 | Uninduced | 5.771 |
| SRR8749032 | Uninduced | 7.203 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.528 |
| SRR8400027 | Control-Root | 0.522 |