Gene detail information of Glyur000053s00006491.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G39960.13.00E-42Microsomal signal peptidase 25 kDa subunit (SPC25)
NRXP_004149246.12.34E-63PREDICTED: probable signal peptidase complex subunit 2-like [Cucumis sativus]
Swissprottr|P58684|SPCS2_ARATH4.00E-52Probable signal peptidase complex subunit 2
trEMBLtr|B9SLI4|B9SLI4_RICCO8.00E-63Microsomal signal peptidase 25 kD subunit, putative {ECO:0000313|EMBL:EEF35484.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00053431058434322+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K12947SPCS2, SPC2 EC:3.4.-.- Protein export map03060


Gene Ontology

biological_process

GO:0006465  signal peptide processing


cellular_component

GO:0005787  signal peptidase complex

GO:0016021  integral component of membrane


molecular_function

GO:0008233  peptidase activity

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000053s00006491.1PF06703.6SPC25281142.70E-19


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.640
SRR1783600control22.195
SRR1783602moderate drought stress14.405
SRR1811619moderate drought stress14.058

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain56.957
DRR006520Root Summer glycyrrhizin high producing strain55.260
DRR006521Root Winter glycyrrhizin high producing strain52.188
DRR006522Root Winter glycyrrhizin high producing strain51.643
DRR006523Root Summer glycyrrhizin low producing strain35.025
DRR006524Root Summer glycyrrhizin low producing strain34.452
DRR006525Leaf Summer glycyrrhizin high producing strain27.005
DRR006526Leaf Summer glycyrrhizin high producing strain26.656

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)78.044
SRR2868004Drought Stress(Tissue:root)73.438
SRR2967015Control (Tissue:root)58.001

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave50.091
SRR9715740Leave48.176
SRR9715741Leave48.397
SRR9715739Root14.435
SRR9715742Root32.573
SRR9715743Root27.879

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h125.864
SRR8749028MeJA induced 9h47.976
SRR8749029MeJA induced 9h97.564
SRR8749030Uninduced35.701
SRR8749031Uninduced26.732
SRR8749032Uninduced50.073

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root86.683
SRR8400027Control-Root86.750

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved